Variant report

Variant	rs645666
Chromosome Location	chr6:27760821-27760822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27170058..27171703-chr6:27759137..27761536,2	K562	blood:
2	chr6:27100250..27106326-chr6:27760451..27766140,11	K562	blood:
3	chr6:27739695..27740963-chr6:27759065..27761089,16	K562	blood:
4	chr6:27753667..27756583-chr6:27759368..27762944,3	MCF-7	breast:
5	chr6:27657772..27659329-chr6:27759649..27761328,2	K562	blood:
6	chr6:27485668..27488646-chr6:27758590..27761132,3	K562	blood:
7	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
8	chr6:27114006..27117036-chr6:27757765..27761399,4	MCF-7	breast:
9	chr6:27744761..27747867-chr6:27758538..27761675,3	MCF-7	breast:
10	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
11	chr6:27100058..27102201-chr6:27759619..27761680,3	K562	blood:
12	chr6:27759954..27762609-chr6:27862725..27865000,3	MCF-7	breast:
13	chr6:27199807..27202562-chr6:27760063..27762279,2	MCF-7	breast:
14	chr6:27760274..27760937-chr6:27862927..27863500,2	K562	blood:
15	chr6:27112343..27120362-chr6:27757252..27765476,17	K562	blood:
16	chr6:27111619..27120059-chr6:27760198..27767915,14	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10456356	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10456357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12154137	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12209038	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200498	0.90[EUR][1000 genomes]
rs200499	0.86[EUR][1000 genomes]
rs2393997	1.00[ASN][1000 genomes]
rs4711160	1.00[ASN][1000 genomes]
rs6930169	1.00[ASN][1000 genomes]
rs7748123	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27759000-27761000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:27759000-27761000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:27759000-27761000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:27759000-27761000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:27759000-27761000	Active TSS	Fetal Kidney	kidney
6	chr6:27759000-27761000	Active TSS	NHDF-Ad	bronchial
7	chr6:27759000-27761200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:27759000-27761200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:27759000-27761200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:27759000-27761200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:27759000-27761200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:27759000-27761200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:27759000-27761200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:27759000-27761400	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:27759000-27761400	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:27759000-27761600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:27759200-27761000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:27759200-27761000	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:27759200-27761000	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:27759200-27761000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:27759200-27761000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:27759200-27761000	Active TSS	A549	lung
23	chr6:27759200-27761000	Active TSS	K562	blood
24	chr6:27759200-27761200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr6:27759200-27761200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:27759200-27761200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:27759200-27761200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:27759200-27761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:27759200-27761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:27759200-27761200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:27759200-27761400	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr6:27759200-27761400	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr6:27759400-27761000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr6:27759400-27761000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:27759400-27761200	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr6:27759600-27761200	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr6:27759800-27761000	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr6:27759800-27761000	Active TSS	Fetal Intestine Small	intestine
39	chr6:27759800-27761000	Active TSS	Fetal Lung	lung
40	chr6:27759800-27761000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
41	chr6:27760000-27761000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:27760000-27761200	Active TSS	Fetal Brain Male	brain
43	chr6:27760200-27761000	Flanking Active TSS	Fetal Thymus	thymus
44	chr6:27760200-27761000	Flanking Active TSS	Thymus	Thymus
45	chr6:27760200-27761200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr6:27760200-27761600	Flanking Active TSS	Hela-S3	cervix
47	chr6:27760400-27761000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr6:27760400-27761000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:27760400-27761000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr6:27760400-27761000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum

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