Variant report

Variant	rs12211114
Chromosome Location	chr6:120630456-120630457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12210907	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12211015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12211018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1318688	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13206675	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35157298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35232694	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62425232	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62425234	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71559882	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7739590	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9385128	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9387741	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464033	chr6:120367185-120636298	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604564	chr6:120367185-120636298	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886575	chr6:120509191-120651554	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604567	chr6:120535362-120660498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886576	chr6:120537219-120651554	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886577	chr6:120570796-120763235	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886578	chr6:120570796-120805934	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886579	chr6:120577152-120669986	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886580	chr6:120577152-120805934	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv604568	chr6:120581725-120669986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886582	chr6:120590561-120736857	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1804579	chr6:120618914-120658827	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1851247	chr6:120618914-120658827	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv10335	chr6:120628982-120642503	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1796038	chr6:120629256-120647215	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1826302	chr6:120629256-120652750	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120620800-120631600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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