Variant report

Variant	rs35232694
Chromosome Location	chr6:120674285-120674286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12209042	0.82[EUR][1000 genomes]
rs12210907	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12211015	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12211018	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12211114	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1318688	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13200120	0.82[EUR][1000 genomes]
rs13206675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35157298	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62425232	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62425234	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71559882	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7739590	0.81[AMR][1000 genomes]
rs9385128	0.86[AMR][1000 genomes]
rs9387741	0.89[AMR][1000 genomes]
rs9688422	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886577	chr6:120570796-120763235	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886578	chr6:120570796-120805934	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886580	chr6:120577152-120805934	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886582	chr6:120590561-120736857	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv821651	chr6:120635010-120830963	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv886583	chr6:120670149-120763235	Enhancers Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120670600-120675800	Weak transcription	NHDF-Ad	bronchial
2	chr6:120673400-120675000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:120674000-120674600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:120674000-120674600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:120674200-120674400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:120674200-120674600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:120674200-120674600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:120674200-120674800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:120674200-120677400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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