Variant report

Variant	rs12211527
Chromosome Location	chr6:82059682-82059683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1015917	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661414	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1343246	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343252	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343253	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557209	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1857306	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706138	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706139	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935145	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935610	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745547	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738725	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7749029	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9344163	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352999	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82059000-82060000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:82059000-82060200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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