Variant report

Variant	rs7749029
Chromosome Location	chr6:82069288-82069289
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1015917	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11753135	0.80[AMR][1000 genomes]
rs11758279	0.80[AMR][1000 genomes]
rs12211527	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12661414	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1343246	0.96[ASN][1000 genomes]
rs1343252	0.96[ASN][1000 genomes]
rs1343253	0.96[ASN][1000 genomes]
rs1373361	0.80[AMR][1000 genomes]
rs1557209	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857306	0.96[ASN][1000 genomes]
rs2120537	0.80[AMR][1000 genomes]
rs4706138	0.96[ASN][1000 genomes]
rs4706139	0.96[ASN][1000 genomes]
rs6910975	0.80[AMR][1000 genomes]
rs6927320	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6931814	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6935145	0.96[ASN][1000 genomes]
rs6935610	0.96[ASN][1000 genomes]
rs745547	0.96[ASN][1000 genomes]
rs7738725	0.96[ASN][1000 genomes]
rs9294220	0.81[AFR][1000 genomes]
rs9294221	0.80[AFR][1000 genomes]
rs9294222	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9294224	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9294225	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9294226	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9341882	0.80[AMR][1000 genomes]
rs9344163	0.96[ASN][1000 genomes]
rs9344167	0.80[AMR][1000 genomes]
rs9350926	0.80[AMR][1000 genomes]
rs9352999	0.96[ASN][1000 genomes]
rs9359485	0.80[AMR][1000 genomes]
rs9359486	0.80[AMR][1000 genomes]
rs9359487	0.80[AMR][1000 genomes]
rs9359488	0.80[AMR][1000 genomes]
rs9361802	0.81[AFR][1000 genomes]
rs9361806	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9361807	0.80[AMR][1000 genomes]
rs9885937	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82068400-82069400	Enhancers	Stomach Mucosa	stomach
2	chr6:82069000-82069400	Enhancers	Liver	Liver

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