Variant report

Variant	rs9294220
Chromosome Location	chr6:82083378-82083379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11753135	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11758279	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11759966	0.82[ASN][1000 genomes]
rs1373361	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1891700	0.81[ASN][1000 genomes]
rs2120537	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2166042	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6910975	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6926940	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6927320	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6931814	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7749029	0.81[AFR][1000 genomes]
rs9283800	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294221	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294222	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9294224	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9294225	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9294226	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9341882	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9344166	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9344167	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9350926	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9359485	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9359486	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9359487	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9359488	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9361801	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361803	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361806	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9361807	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9361812	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9443905	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9449310	0.89[ASN][1000 genomes]
rs9449314	0.84[ASN][1000 genomes]
rs9885937	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82082200-82086400	Weak transcription	Fetal Heart	heart
2	chr6:82083200-82084000	Enhancers	Stomach Mucosa	stomach

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