Variant report

Variant	rs12212455
Chromosome Location	chr6:36478963-36478964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:36478730-36478986	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:36478709..36482254-chr6:36484077..36487660,3	K562	blood:
2	chr6:36478422..36481573-chr6:36513785..36517624,3	K562	blood:
3	chr6:36475084..36480133-chr6:36561035..36564418,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264878	TF binding region
ENSG00000112081	Chromatin interaction
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4236051	1.00[CEU][hapmap]
rs9470315	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv5260	chr6:36471464-36516119	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36450000-36479800	Weak transcription	Stomach Mucosa	stomach
3	chr6:36456400-36512600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:36457400-36484400	Weak transcription	Right Atrium	heart
5	chr6:36461400-36481400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:36463000-36507200	Weak transcription	Fetal Brain Male	brain
7	chr6:36463600-36493600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr6:36463800-36493400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:36463800-36513600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:36465600-36489800	Weak transcription	Psoas Muscle	Psoas
11	chr6:36467800-36479800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:36468000-36482400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:36468000-36487000	Weak transcription	Aorta	Aorta
14	chr6:36469000-36482400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:36469600-36479000	Strong transcription	HSMM	muscle
16	chr6:36470400-36480400	Strong transcription	Fetal Lung	lung
17	chr6:36470600-36498800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:36472800-36483200	Strong transcription	Fetal Muscle Leg	muscle
19	chr6:36472800-36483400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:36473200-36480200	Strong transcription	HSMMtube	muscle
21	chr6:36473600-36482000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:36473600-36491400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:36473600-36492200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:36473600-36500000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:36473800-36479200	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:36473800-36482800	Weak transcription	Hela-S3	cervix
27	chr6:36473800-36490400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:36474000-36495200	Weak transcription	Fetal Heart	heart
29	chr6:36474200-36482800	Weak transcription	GM12878-XiMat	blood
30	chr6:36474200-36483000	Weak transcription	Small Intestine	intestine
31	chr6:36474200-36486800	Weak transcription	A549	lung
32	chr6:36474400-36483600	Weak transcription	Brain Substantia Nigra	brain
33	chr6:36474600-36481600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:36474600-36482400	Weak transcription	HMEC	breast
35	chr6:36475200-36482000	Weak transcription	Fetal Kidney	kidney
36	chr6:36475200-36482200	Weak transcription	HepG2	liver
37	chr6:36475600-36483200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:36475600-36485400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:36476000-36485400	Strong transcription	Primary T cells from cord blood	blood
40	chr6:36476200-36479000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:36476200-36479400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:36476200-36479600	Strong transcription	Spleen	Spleen
43	chr6:36476200-36483000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:36476200-36497800	Strong transcription	Dnd41	blood
45	chr6:36476400-36479200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:36476400-36479200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr6:36476400-36480200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:36476400-36482400	Strong transcription	Left Ventricle	heart
49	chr6:36476400-36482600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:36476400-36483400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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