Variant report

Variant	rs12213394
Chromosome Location	chr6:161797681-161797682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10455880	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs10455881	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs10455882	0.89[EUR][1000 genomes]
rs10455883	0.83[EUR][1000 genomes]
rs10455884	0.89[EUR][1000 genomes]
rs11966738	1.00[ASN][1000 genomes]
rs12198438	1.00[ASN][1000 genomes]
rs12208181	0.85[CEU][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs12210160	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs12211065	0.85[CEU][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs12213397	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215325	1.00[ASN][1000 genomes]
rs12215774	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs13206689	1.00[ASN][1000 genomes]
rs13207820	1.00[ASN][1000 genomes]
rs13216830	1.00[ASN][1000 genomes]
rs13217906	1.00[CEU][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes]
rs13219048	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs13220090	1.00[ASN][1000 genomes]
rs16892499	1.00[ASN][1000 genomes]
rs17641094	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs1801334	1.00[ASN][1000 genomes]
rs34590339	0.89[EUR][1000 genomes]
rs35184046	1.00[ASN][1000 genomes]
rs35280474	1.00[ASN][1000 genomes]
rs35812310	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996169	1.00[ASN][1000 genomes]
rs66471370	1.00[ASN][1000 genomes]
rs71567607	1.00[ASN][1000 genomes]
rs73021269	1.00[ASN][1000 genomes]
rs73021292	1.00[ASN][1000 genomes]
rs73023258	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv869611	chr6:161690974-161817564	Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1025168	chr6:161702621-161831885	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv5577	chr6:161775026-161819733	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161780600-161835800	Weak transcription	Right Atrium	heart
2	chr6:161795800-161802200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:161796400-161798800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:161797000-161797800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:161797000-161798000	Enhancers	Esophagus	oesophagus
6	chr6:161797000-161800400	Weak transcription	Pancreas	Pancrea
7	chr6:161797200-161797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:161797200-161797800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:161797200-161797800	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:161797200-161797800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:161797200-161799400	Weak transcription	Placenta	Placenta
12	chr6:161797200-161803400	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:161797400-161797800	Enhancers	Brain Hippocampus Middle	brain
14	chr6:161797400-161797800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:161797400-161797800	Enhancers	Brain Substantia Nigra	brain
16	chr6:161797600-161800200	Weak transcription	Gastric	stomach
17	chr6:161797600-161804800	Weak transcription	Spleen	Spleen
18	chr6:161797600-161815000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links