Variant report

Variant	rs12215850
Chromosome Location	chr6:38264853-38264854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1033480	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10947725	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947726	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947728	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947729	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759824	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1205108	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs12191714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12201631	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202804	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12206324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12208912	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12212983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12215330	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1883610	0.86[JPT][hapmap]
rs1931758	0.85[ASN][1000 genomes]
rs1983605	1.00[JPT][hapmap]
rs2179532	0.85[CEU][hapmap]
rs2179533	0.85[CEU][hapmap]
rs228179	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs228186	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs228188	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs28445226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4236058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4711542	1.00[JPT][hapmap]
rs4711546	1.00[JPT][hapmap]
rs4714152	1.00[JPT][hapmap]
rs4714157	1.00[JPT][hapmap]
rs4714165	0.88[JPT][hapmap]
rs6899746	1.00[JPT][hapmap]
rs6901086	1.00[JPT][hapmap]
rs6904723	1.00[JPT][hapmap]
rs6933268	1.00[JPT][hapmap]
rs6933758	1.00[JPT][hapmap]
rs6940319	1.00[JPT][hapmap]
rs742515	1.00[JPT][hapmap]
rs7748599	1.00[JPT][hapmap]
rs7749685	1.00[JPT][hapmap]
rs7759629	1.00[JPT][hapmap]
rs7763775	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7766214	1.00[JPT][hapmap]
rs7770868	1.00[JPT][hapmap]
rs871183	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9349073	1.00[JPT][hapmap]
rs9357272	1.00[JPT][hapmap]
rs9380743	1.00[JPT][hapmap]
rs9394495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9470885	1.00[JPT][hapmap]
rs9470888	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38224400-38267600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:38249200-38275600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links