Variant report

Variant	rs9394495
Chromosome Location	chr6:38371192-38371193
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38368148..38369962-chr6:38370893..38373695,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1033480	1.00[CHB][hapmap]
rs10947728	0.81[ASN][1000 genomes]
rs11759824	0.81[ASN][1000 genomes]
rs1205108	1.00[CHB][hapmap]
rs12191714	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12201631	0.85[ASN][1000 genomes]
rs12202804	0.85[ASN][1000 genomes]
rs12206324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206905	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12212983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12214470	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12215850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1883610	0.86[JPT][hapmap]
rs1931758	0.85[ASN][1000 genomes]
rs1983605	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs228179	1.00[CHB][hapmap]
rs228186	1.00[CHB][hapmap]
rs228188	1.00[CHB][hapmap]
rs28445226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4236058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4711539	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711542	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4711546	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4714147	0.86[EUR][1000 genomes]
rs4714148	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4714152	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4714157	1.00[JPT][hapmap]
rs4714165	0.88[JPT][hapmap]
rs6458051	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6458052	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6899746	1.00[JPT][hapmap]
rs6901086	1.00[JPT][hapmap]
rs6904723	1.00[JPT][hapmap]
rs6923701	0.80[ASN][1000 genomes]
rs6933268	1.00[JPT][hapmap]
rs6933758	0.88[JPT][hapmap]
rs6940319	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs742515	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7748599	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7749685	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7755429	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7759629	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7763775	1.00[CHB][hapmap]
rs7766214	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7766509	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7770868	1.00[JPT][hapmap]
rs871183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9349072	0.90[EUR][1000 genomes]
rs9349073	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349079	0.80[ASN][1000 genomes]
rs9357272	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9369059	0.80[EUR][1000 genomes]
rs9380743	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9470875	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470885	1.00[JPT][hapmap]
rs9470888	1.00[JPT][hapmap]
rs9470891	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022724	chr6:38332368-38454527	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv602958	chr6:38362024-38446634	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38354000-38376000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:38360000-38372200	Weak transcription	Psoas Muscle	Psoas
3	chr6:38360400-38372800	Weak transcription	Left Ventricle	heart
4	chr6:38361400-38372400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:38362200-38371800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:38363000-38372000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:38365800-38372600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:38367200-38372000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:38368200-38373600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:38368600-38371400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:38368600-38371400	Weak transcription	Brain Angular Gyrus	brain
12	chr6:38368600-38372400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:38368800-38372400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:38369200-38371200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:38369600-38371800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:38370800-38372400	Weak transcription	Right Atrium	heart
17	chr6:38370800-38375200	Enhancers	Fetal Brain Male	brain
18	chr6:38371000-38371600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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