Variant report

Variant	rs12216163
Chromosome Location	chr6:164090792-164090793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10455926	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191767	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234977	1.00[CHB][hapmap]
rs1744929	1.00[CHB][hapmap]
rs2025272	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321849	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321850	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709737	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709739	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455913	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902395	1.00[CHB][hapmap]
rs71569414	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744302	1.00[CHB][hapmap]
rs7754222	1.00[CHB][hapmap]
rs7764847	1.00[CHB][hapmap]
rs7767021	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767804	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347765	1.00[CHB][hapmap]
rs9365575	1.00[CHB][hapmap]
rs9458843	1.00[CHB][hapmap]
rs9458860	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164057200-164092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164085600-164092000	Enhancers	Brain Germinal Matrix	brain
3	chr6:164086200-164092800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:164086400-164091000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:164088400-164093000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:164089000-164090800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:164089400-164090800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:164089400-164091400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:164089800-164090800	Weak transcription	Fetal Kidney	kidney
10	chr6:164089800-164091000	Enhancers	GM12878-XiMat	blood
11	chr6:164089800-164091200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:164089800-164092600	Enhancers	Primary B cells from cord blood	blood
13	chr6:164090200-164091000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:164090600-164090800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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