Variant report

Variant	rs12216680
Chromosome Location	chr7:105419930-105419931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105408642..105410804-chr7:105418251..105420612,2	MCF-7	breast:
2	chr7:105411694..105416856-chr7:105416985..105421680,5	MCF-7	breast:
3	chr7:105418242..105420213-chr7:105421359..105423266,2	K562	blood:
4	chr7:105414395..105417923-chr7:105418291..105420665,4	K562	blood:
5	chr7:105418027..105420678-chr7:105423807..105425573,2	K562	blood:
6	chr7:105418693..105422569-chr7:105427730..105430708,5	MCF-7	breast:

rs_ID	r²[population]
rs12374680	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17152089	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17152095	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2108322	0.93[EUR][1000 genomes]
rs56982287	0.87[EUR][1000 genomes]
rs57952850	0.93[EUR][1000 genomes]
rs59878806	0.84[EUR][1000 genomes]
rs60087520	0.93[EUR][1000 genomes]
rs61108238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61365731	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
4	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
6	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:105406600-105428600	Weak transcription	Gastric	stomach
12	chr7:105407800-105423000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:105411200-105422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:105411200-105423400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:105411200-105426400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:105411200-105435400	Weak transcription	Right Atrium	heart
17	chr7:105411400-105420000	Weak transcription	Fetal Brain Male	brain
18	chr7:105411400-105424400	Weak transcription	Fetal Stomach	stomach
19	chr7:105411400-105428800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:105414200-105427800	Weak transcription	Brain Germinal Matrix	brain
21	chr7:105414400-105432800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:105416400-105420400	Weak transcription	Fetal Lung	lung
24	chr7:105416600-105427400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:105416800-105420400	Weak transcription	Ovary	ovary
26	chr7:105416800-105423200	Weak transcription	Fetal Intestine Small	intestine
27	chr7:105416800-105427400	Weak transcription	Left Ventricle	heart
28	chr7:105416800-105428600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:105416800-105433800	Weak transcription	Brain Angular Gyrus	brain
30	chr7:105417000-105420600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:105417200-105420600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:105417200-105422600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:105417200-105422600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:105417200-105441800	Weak transcription	HepG2	liver
35	chr7:105417400-105427400	Weak transcription	Hela-S3	cervix
36	chr7:105417400-105439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:105417800-105420400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:105417800-105422800	Weak transcription	Aorta	Aorta
39	chr7:105417800-105426200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:105417800-105427400	Weak transcription	Placenta	Placenta
41	chr7:105417800-105430000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:105418000-105422600	Weak transcription	HMEC	breast
43	chr7:105418000-105435400	Weak transcription	Brain Substantia Nigra	brain
44	chr7:105418200-105420400	Weak transcription	Fetal Muscle Leg	muscle
45	chr7:105418200-105422400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:105418200-105422400	Weak transcription	Fetal Intestine Large	intestine
47	chr7:105418200-105422600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:105418200-105422600	Weak transcription	HSMM	muscle
49	chr7:105418200-105422800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:105418200-105422800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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