Variant report

Variant	rs60087520
Chromosome Location	chr7:105410238-105410239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105408949..105411804-chr7:105412026..105413958,2	K562	blood:
2	chr7:105410200..105411959-chr7:105412477..105415907,3	MCF-7	breast:
3	chr7:105408610..105410382-chr7:105440974..105443928,2	MCF-7	breast:
4	chr7:105409136..105411135-chr7:105515971..105517753,2	MCF-7	breast:
5	chr7:105409060..105411272-chr7:105549383..105550898,2	MCF-7	breast:
6	chr7:105409840..105412266-chr7:105415656..105418667,3	K562	blood:
7	chr7:105408642..105410804-chr7:105418251..105420612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

rs_ID	r²[population]
rs10281039	0.91[ASN][1000 genomes]
rs12216680	0.93[EUR][1000 genomes]
rs12374680	0.90[EUR][1000 genomes]
rs17152089	0.93[EUR][1000 genomes]
rs17152095	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17152107	1.00[ASN][1000 genomes]
rs2108322	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56982287	0.93[EUR][1000 genomes]
rs57952850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59878806	0.90[EUR][1000 genomes]
rs61108238	0.93[EUR][1000 genomes]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105364600-105416400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:105379400-105416200	Weak transcription	Left Ventricle	heart
5	chr7:105382600-105410400	Weak transcription	Right Atrium	heart
6	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
7	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:105386600-105416600	Weak transcription	Right Ventricle	heart
9	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
10	chr7:105389200-105410400	Weak transcription	Aorta	Aorta
11	chr7:105393800-105411000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:105399400-105413600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:105400200-105410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:105401800-105410600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:105401800-105416000	Weak transcription	Fetal Intestine Small	intestine
19	chr7:105402200-105410600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:105403000-105416400	Weak transcription	Primary T cells from cord blood	blood
22	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:105405200-105410400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:105406200-105411600	Enhancers	Fetal Muscle Leg	muscle
25	chr7:105406400-105410400	Enhancers	Fetal Brain Female	brain
26	chr7:105406400-105411400	Enhancers	Fetal Stomach	stomach
27	chr7:105406400-105412000	Enhancers	Fetal Lung	lung
28	chr7:105406600-105410400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:105406600-105410400	Weak transcription	A549	lung
30	chr7:105406600-105413800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:105406600-105428600	Weak transcription	Gastric	stomach
32	chr7:105406800-105410400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:105407000-105411200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:105407200-105411400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr7:105407400-105410800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr7:105407800-105410400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:105407800-105423000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr7:105408400-105417000	Weak transcription	Fetal Intestine Large	intestine
39	chr7:105408600-105413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:105408800-105416000	Weak transcription	HepG2	liver
41	chr7:105409000-105410400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr7:105409000-105410400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:105409000-105411200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr7:105409000-105416000	Weak transcription	Ovary	ovary
45	chr7:105409200-105410600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr7:105409200-105411200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr7:105409200-105411400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:105409200-105415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr7:105409400-105411000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr7:105409400-105411200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links