Variant report

Variant	rs17152107
Chromosome Location	chr7:105413922-105413923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105411694..105416856-chr7:105416985..105421680,5	MCF-7	breast:
2	chr7:105408949..105411804-chr7:105412026..105413958,2	K562	blood:
3	chr7:105410200..105411959-chr7:105412477..105415907,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10281039	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204371	0.92[YRI][hapmap]
rs2108322	0.91[ASN][1000 genomes]
rs2529369	0.92[YRI][hapmap]
rs57952850	1.00[ASN][1000 genomes]
rs60087520	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17152107	RINT1	cis	parietal	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105364600-105416400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:105379400-105416200	Weak transcription	Left Ventricle	heart
5	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
6	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:105386600-105416600	Weak transcription	Right Ventricle	heart
8	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
9	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:105401800-105416000	Weak transcription	Fetal Intestine Small	intestine
13	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr7:105403000-105416400	Weak transcription	Primary T cells from cord blood	blood
15	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:105406600-105428600	Weak transcription	Gastric	stomach
17	chr7:105407800-105423000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:105408400-105417000	Weak transcription	Fetal Intestine Large	intestine
19	chr7:105408800-105416000	Weak transcription	HepG2	liver
20	chr7:105409000-105416000	Weak transcription	Ovary	ovary
21	chr7:105409200-105415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:105410800-105417600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:105411000-105415600	Weak transcription	HSMM	muscle
24	chr7:105411000-105415800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:105411000-105415800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:105411200-105415400	Weak transcription	A549	lung
27	chr7:105411200-105415400	Weak transcription	Osteobl	bone
28	chr7:105411200-105415600	Weak transcription	HSMMtube	muscle
29	chr7:105411200-105415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:105411200-105416000	Weak transcription	Lung	lung
31	chr7:105411200-105416000	Weak transcription	HMEC	breast
32	chr7:105411200-105416200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:105411200-105416400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:105411200-105416400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:105411200-105422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:105411200-105423400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:105411200-105426400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:105411200-105435400	Weak transcription	Right Atrium	heart
39	chr7:105411400-105415200	Weak transcription	NHLF	lung
40	chr7:105411400-105415600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:105411400-105415800	Weak transcription	Hela-S3	cervix
42	chr7:105411400-105416000	Weak transcription	Placenta	Placenta
43	chr7:105411400-105416000	Weak transcription	HUVEC	blood vessel
44	chr7:105411400-105420000	Weak transcription	Fetal Brain Male	brain
45	chr7:105411400-105424400	Weak transcription	Fetal Stomach	stomach
46	chr7:105411400-105428800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr7:105411800-105416200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr7:105412000-105416200	Weak transcription	Fetal Lung	lung
49	chr7:105412400-105414200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:105412400-105415600	Weak transcription	Muscle Satellite Cultured Cells	--

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