Variant report

Variant	rs10281039
Chromosome Location	chr7:105408015-105408016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105406325..105408291-chr7:105722080..105723777,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1204371	0.92[YRI][hapmap]
rs12374680	0.86[ASN][1000 genomes]
rs17152089	0.85[CHD][hapmap];0.85[GIH][hapmap];0.86[ASN][1000 genomes]
rs17152107	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2108322	0.98[ASN][1000 genomes]
rs2529369	0.92[YRI][hapmap]
rs57952850	0.91[ASN][1000 genomes]
rs60087520	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10281039	RINT1	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105364600-105416400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:105379400-105416200	Weak transcription	Left Ventricle	heart
5	chr7:105382600-105410400	Weak transcription	Right Atrium	heart
6	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
7	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:105386600-105416600	Weak transcription	Right Ventricle	heart
9	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
10	chr7:105389200-105410400	Weak transcription	Aorta	Aorta
11	chr7:105389800-105408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:105392800-105409000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:105393200-105410000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:105393400-105409000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:105393800-105411000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:105397000-105410000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:105399400-105408800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:105399400-105409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:105399400-105413600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:105400200-105410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:105400800-105410200	Weak transcription	Fetal Kidney	kidney
24	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:105401000-105410000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr7:105401200-105409200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:105401200-105409200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:105401200-105409600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:105401200-105410200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:105401400-105410200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:105401400-105410200	Weak transcription	Osteobl	bone
32	chr7:105401800-105410600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:105401800-105416000	Weak transcription	Fetal Intestine Small	intestine
34	chr7:105402200-105409600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:105402200-105410600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr7:105402600-105409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:105403000-105416400	Weak transcription	Primary T cells from cord blood	blood
39	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:105405200-105410400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:105405800-105408200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:105405800-105408200	Enhancers	NHLF	lung
43	chr7:105405800-105408400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:105406200-105411600	Enhancers	Fetal Muscle Leg	muscle
45	chr7:105406400-105409000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:105406400-105409800	Weak transcription	Brain Germinal Matrix	brain
47	chr7:105406400-105410400	Enhancers	Fetal Brain Female	brain
48	chr7:105406400-105411400	Enhancers	Fetal Stomach	stomach
49	chr7:105406400-105412000	Enhancers	Fetal Lung	lung
50	chr7:105406600-105410400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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