Variant report

Variant	rs1222026
Chromosome Location	chr5:79280231-79280232
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs256437	1.00[JPT][hapmap]
rs256449	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79260600-79286200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:79269000-79286400	Weak transcription	Thymus	Thymus
3	chr5:79269800-79281400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:79269800-79286000	Weak transcription	Fetal Heart	heart
5	chr5:79270000-79286000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:79270200-79286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:79270800-79284800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:79271000-79286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:79271200-79280400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:79271200-79281000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:79271200-79282000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:79271200-79285200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:79271200-79285800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:79271200-79285800	Weak transcription	NHLF	lung
15	chr5:79271400-79284000	Weak transcription	HSMMtube	muscle
16	chr5:79271400-79285400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:79271400-79286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:79271400-79286000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:79271600-79280800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:79271600-79286000	Weak transcription	HUVEC	blood vessel
21	chr5:79272200-79286400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:79272400-79285000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:79272400-79286400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr5:79272400-79286400	Weak transcription	Pancreas	Pancrea
25	chr5:79272600-79284800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:79272600-79285000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:79272600-79285000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:79272600-79285200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:79272600-79286000	Weak transcription	Small Intestine	intestine
30	chr5:79272600-79286400	Weak transcription	Gastric	stomach
31	chr5:79272800-79285000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:79272800-79285400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:79273000-79284600	Strong transcription	Fetal Intestine Large	intestine
34	chr5:79273000-79284800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr5:79273000-79284800	Strong transcription	Adipose Nuclei	Adipose
36	chr5:79273400-79286000	Weak transcription	Aorta	Aorta
37	chr5:79273600-79284600	Strong transcription	Placenta	Placenta
38	chr5:79274000-79286400	Weak transcription	Esophagus	oesophagus
39	chr5:79274200-79281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:79274200-79286200	Weak transcription	Colonic Mucosa	Colon
41	chr5:79274400-79286000	Weak transcription	Fetal Intestine Small	intestine
42	chr5:79274600-79281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:79275000-79285000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr5:79275200-79284800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:79275800-79284800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:79276000-79280800	Strong transcription	Colon Smooth Muscle	Colon
47	chr5:79276000-79284400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr5:79276000-79284600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr5:79276000-79285000	Strong transcription	NHDF-Ad	bronchial
50	chr5:79276000-79285400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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