Variant report

Variant	rs256437
Chromosome Location	chr5:79368016-79368017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:79368013-79368063	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79365975..79368372-chr5:79371520..79373267,2	MCF-7	breast:

Variant related genes	Relation type
THBS4	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10755302	1.00[AFR][1000 genomes]
rs1222026	1.00[JPT][hapmap]
rs1222027	1.00[ASN][1000 genomes]
rs17196895	1.00[AFR][1000 genomes]
rs256449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79351600-79379200	Weak transcription	Pancreas	Pancrea
2	chr5:79352400-79378200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:79354600-79378400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:79356600-79373800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:79357000-79373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:79357200-79372800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:79358400-79373600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:79359600-79378200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:79360000-79378200	Weak transcription	Brain Angular Gyrus	brain
10	chr5:79361000-79374400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:79361400-79378400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:79361600-79378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:79361800-79378400	Strong transcription	Primary T cells from cord blood	blood
14	chr5:79362600-79377800	Weak transcription	Brain Germinal Matrix	brain
15	chr5:79362600-79378600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:79362800-79372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:79363000-79378800	Weak transcription	Thymus	Thymus
18	chr5:79364200-79372800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:79364200-79373000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:79364400-79369200	Enhancers	NHDF-Ad	bronchial
21	chr5:79364400-79378200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:79365400-79369000	Enhancers	Osteobl	bone
23	chr5:79365800-79369000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:79365800-79378200	Weak transcription	Fetal Stomach	stomach
25	chr5:79366000-79379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:79366000-79388000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:79366200-79368200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:79366200-79368200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:79366200-79373000	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:79366200-79373000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:79366200-79373800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:79366200-79378200	Weak transcription	Adipose Nuclei	Adipose
33	chr5:79366200-79378400	Weak transcription	Fetal Intestine Small	intestine
34	chr5:79366200-79379000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr5:79366200-79385000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:79366200-79392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:79366400-79368200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:79366400-79375600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:79366400-79378400	Weak transcription	Liver	Liver
40	chr5:79366400-79378600	Weak transcription	Placenta	Placenta
41	chr5:79366400-79379200	Weak transcription	Spleen	Spleen
42	chr5:79366600-79368400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:79366600-79368800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr5:79366600-79371200	Weak transcription	Ovary	ovary
45	chr5:79366600-79372000	Weak transcription	Right Atrium	heart
46	chr5:79366600-79372600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr5:79366600-79378200	Weak transcription	Fetal Thymus	thymus
48	chr5:79366600-79378400	Weak transcription	Fetal Kidney	kidney
49	chr5:79366600-79379000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr5:79366600-79379200	Weak transcription	Lung	lung

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