Variant report

Variant	rs12223361
Chromosome Location	chr11:72904115-72904116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72903145..72906277-chr11:72938581..72939821,37	MCF-7	breast:
2	chr11:72902199..72905029-chr11:72980866..72983815,3	MCF-7	breast:
3	chr11:72853185..72855983-chr11:72901685..72904138,2	K562	blood:
4	chr11:72432628..72434936-chr11:72902860..72905744,2	MCF-7	breast:
5	chr11:72903688..72906674-chr11:73019006..73020890,3	MCF-7	breast:
6	chr11:72903633..72905265-chr11:73086102..73087754,2	MCF-7	breast:
7	chr11:72893314..72909448-chr11:72922899..72955285,117	MCF-7	breast:
8	chr11:72901328..72904232-chr11:73087529..73089470,2	MCF-7	breast:
9	chr11:72491534..72496821-chr11:72902026..72908279,9	MCF-7	breast:
10	chr11:72903231..72907672-chr11:72998448..73001099,3	MCF-7	breast:
11	chr11:72353124..72354805-chr11:72902919..72904467,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction
ENSG00000175591	Chromatin interaction
ENSG00000255808	Chromatin interaction
ENSG00000110237	Chromatin interaction
ENSG00000171631	Chromatin interaction
ENSG00000186635	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000186642	Chromatin interaction
ENSG00000265064	Chromatin interaction
ENSG00000260401	Chromatin interaction
ENSG00000215841	Chromatin interaction
ENSG00000257038	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1783576	1.00[AFR][1000 genomes]
rs573529	1.00[AFR][1000 genomes]
rs7105776	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72896200-72916600	Enhancers	Placenta	Placenta
2	chr11:72896800-72906200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:72897600-72909800	Weak transcription	Pancreas	Pancrea
4	chr11:72897800-72905800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:72899000-72904400	Enhancers	GM12878-XiMat	blood
6	chr11:72899800-72905600	Weak transcription	HSMMtube	muscle
7	chr11:72899800-72911400	Weak transcription	Lung	lung
8	chr11:72900000-72911400	Weak transcription	Psoas Muscle	Psoas
9	chr11:72900400-72908000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:72900600-72918000	Enhancers	Fetal Intestine Large	intestine
11	chr11:72901000-72904400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:72901000-72904800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:72901200-72907800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:72901400-72906200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:72901400-72909000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:72901400-72913200	Weak transcription	Spleen	Spleen
17	chr11:72901600-72905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:72901600-72906000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:72901600-72909800	Weak transcription	Left Ventricle	heart
20	chr11:72902000-72905800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:72902000-72905800	Enhancers	Colonic Mucosa	Colon
22	chr11:72902000-72905800	Enhancers	NHEK	skin
23	chr11:72902000-72906000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr11:72902000-72910200	Enhancers	HMEC	breast
25	chr11:72902200-72911400	Weak transcription	Right Ventricle	heart
26	chr11:72902400-72905400	Enhancers	Small Intestine	intestine
27	chr11:72902400-72914600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:72902600-72915000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:72902800-72905800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:72903200-72904600	Enhancers	Hela-S3	cervix
31	chr11:72903200-72905800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:72903200-72905800	Enhancers	A549	lung
33	chr11:72903400-72905800	Enhancers	Duodenum Mucosa	Duodenum
34	chr11:72903400-72907200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr11:72903600-72907600	Enhancers	Esophagus	oesophagus
36	chr11:72903800-72904400	Weak transcription	Fetal Intestine Small	intestine
37	chr11:72903800-72904800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:72904000-72905800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:72904000-72906000	Weak transcription	Stomach Mucosa	stomach
40	chr11:72904000-72908400	Weak transcription	HUVEC	blood vessel
41	chr11:72904000-72912600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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