Variant report

Variant	rs7105776
Chromosome Location	chr11:72724103-72724104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12223361	1.00[AFR][1000 genomes]
rs1783576	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1785213	1.00[EUR][1000 genomes]
rs573529	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58006230	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108687	0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72687600-72724200	Weak transcription	HMEC	breast
2	chr11:72701000-72727200	Weak transcription	HUVEC	blood vessel
3	chr11:72716200-72731200	Weak transcription	Fetal Kidney	kidney
4	chr11:72719600-72724400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:72720000-72731200	Weak transcription	Small Intestine	intestine
6	chr11:72721800-72724400	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:72722200-72724200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:72722400-72724200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:72722400-72725000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:72722400-72725400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:72722400-72725400	Enhancers	Fetal Heart	heart
13	chr11:72722400-72725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:72722400-72726400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:72722400-72727000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:72722400-72731000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:72722600-72724200	Weak transcription	Adipose Nuclei	Adipose
18	chr11:72722600-72724200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:72722600-72724200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:72722600-72724400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:72722600-72725200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:72722600-72725800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:72722600-72726000	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr11:72722600-72727200	Weak transcription	Fetal Lung	lung
25	chr11:72722600-72727800	Weak transcription	Liver	Liver
26	chr11:72722600-72728000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:72722600-72728000	Weak transcription	Gastric	stomach
28	chr11:72722600-72728000	Weak transcription	Ovary	ovary
29	chr11:72722600-72728200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:72722600-72730600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:72722600-72730600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:72722600-72731000	Weak transcription	Brain Germinal Matrix	brain
33	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
34	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:72722800-72724200	Weak transcription	Pancreas	Pancrea
37	chr11:72722800-72724400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:72722800-72724400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:72722800-72724400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:72722800-72724400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:72722800-72724400	Enhancers	HSMM	muscle
42	chr11:72722800-72724600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:72722800-72724600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:72722800-72724600	Enhancers	NHEK	skin
45	chr11:72722800-72727600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:72722800-72727600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:72722800-72727800	Weak transcription	Fetal Muscle Leg	muscle
48	chr11:72722800-72729200	Weak transcription	Spleen	Spleen
49	chr11:72722800-72730000	Weak transcription	HSMMtube	muscle
50	chr11:72722800-72731000	Weak transcription	Fetal Intestine Large	intestine

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