Variant report

Variant	rs7108687
Chromosome Location	chr11:72879953-72879954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72852106..72853764-chr11:72879372..72881639,3	MCF-7	breast:
2	chr11:72879570..72884410-chr11:72886325..72888856,4	K562	blood:
3	chr11:72879197..72882028-chr11:72901333..72903011,2	K562	blood:
4	chr11:72854922..72856533-chr11:72878651..72880370,2	K562	blood:
5	chr11:72531460..72534697-chr11:72878571..72880744,3	MCF-7	breast:
6	chr11:72879011..72882115-chr11:72882510..72884809,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000256568	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1783576	0.80[MEX][hapmap]
rs1783585	0.91[MEX][hapmap]
rs1791051	0.86[AMR][1000 genomes]
rs56927892	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58895180	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592511	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105289	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105776	0.80[MEX][hapmap]
rs7944670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72870800-72880200	Enhancers	HepG2	liver
2	chr11:72871600-72880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:72871800-72880000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:72873800-72880000	Weak transcription	Lung	lung
5	chr11:72875200-72880000	Weak transcription	HSMMtube	muscle
6	chr11:72875400-72884800	Weak transcription	Adipose Nuclei	Adipose
7	chr11:72876400-72880000	Weak transcription	Placenta	Placenta
8	chr11:72876400-72882600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:72876600-72880200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:72876600-72880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:72876800-72886800	Weak transcription	Primary B cells from cord blood	blood
12	chr11:72878200-72881800	Enhancers	Fetal Heart	heart
13	chr11:72878600-72880000	Weak transcription	Right Ventricle	heart
14	chr11:72878600-72881400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:72878800-72880000	Weak transcription	Left Ventricle	heart
16	chr11:72878800-72880000	Weak transcription	Psoas Muscle	Psoas
17	chr11:72878800-72883000	Enhancers	Spleen	Spleen
18	chr11:72879000-72880000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:72879000-72880600	Weak transcription	GM12878-XiMat	blood
20	chr11:72879000-72887000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:72879200-72880200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:72879200-72880200	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:72879200-72880400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:72879200-72886800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:72879400-72880600	Weak transcription	Right Atrium	heart
26	chr11:72879400-72883800	Weak transcription	Ovary	ovary
27	chr11:72879400-72884000	Weak transcription	Liver	Liver
28	chr11:72879400-72884800	Weak transcription	HUVEC	blood vessel
29	chr11:72879600-72881000	Enhancers	Fetal Muscle Trunk	muscle
30	chr11:72879800-72880400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr11:72879800-72880600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:72879800-72880800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:72879800-72881000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:72879800-72881000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr11:72879800-72882800	Enhancers	Skeletal Muscle Male	skeletal muscle

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