Variant report

Variant	rs12223822
Chromosome Location	chr11:74749283-74749284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10793112	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899059	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899060	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899061	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899064	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899065	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11236296	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236303	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236304	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236306	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236307	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236309	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236310	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236311	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236313	0.94[EUR][1000 genomes]
rs11600328	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12226763	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4456280	0.94[EUR][1000 genomes]
rs4531492	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4554917	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944970	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944971	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56885894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109716	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7482760	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs12223822	XRRA1	cis	Esophagus Mucosa	GTEx
rs12223822	XRRA1	cis	Artery Tibial	GTEx
rs12223822	XRRA1	cis	Stomach	GTEx
rs12223822	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs12223822	RP11-147I3.1	cis	Thyroid	GTEx
rs12223822	XRRA1	cis	Esophagus Muscularis	GTEx
rs12223822	XRRA1	cis	lung	GTEx
rs12223822	XRRA1	cis	Muscle Skeletal	GTEx
rs12223822	XRRA1	cis	Artery Aorta	GTEx
rs12223822	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs12223822	XRRA1	cis	Whole Blood	GTEx
rs12223822	RN7SL239P	cis	Thyroid	GTEx
rs12223822	XRRA1	cis	Heart Left Ventricle	GTEx
rs12223822	XRRA1	cis	Adipose Subcutaneous	GTEx
rs12223822	XRRA1	cis	Nerve Tibial	GTEx
rs12223822	XRRA1	cis	Thyroid	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74743000-74751800	Weak transcription	Right Atrium	heart
2	chr11:74747400-74751200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:74747400-74751400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:74747800-74750800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:74747800-74751200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:74748000-74751200	Weak transcription	K562	blood
7	chr11:74748200-74750800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74748600-74750800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:74748600-74751200	Weak transcription	Fetal Intestine Large	intestine

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