Variant report

Variant	rs11236296
Chromosome Location	chr11:74747058-74747059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74640923..74643300-chr11:74745536..74747928,2	K562	blood:
2	chr11:74745840..74747710-chr11:74751159..74753007,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 29 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10751241	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs10793107	0.91[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs10793108	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs10793112	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899052	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs10899053	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899054	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899058	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899059	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899060	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899061	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10899064	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236281	0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236282	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236289	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236290	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236294	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236303	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236304	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236306	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236307	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236309	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236310	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236311	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11236313	0.80[EUR][1000 genomes]
rs11600328	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11603294	0.90[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12221841	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs12223822	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12226763	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12577127	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12577614	0.80[AMR][1000 genomes]
rs1371410	0.84[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2119028	0.88[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs2165162	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs2165163	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs2298746	0.84[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs2304683	0.84[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs3814726	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs4245440	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4387374	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4456280	0.90[GIH][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs4554917	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4944960	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs4944961	0.88[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap]
rs4944965	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944968	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944970	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4944971	0.82[AMR][1000 genomes]
rs56194145	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56885894	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7105085	0.84[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs7106757	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7109716	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7128739	0.84[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs725460	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7396866	0.92[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs7483351	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919877	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs9787775	0.88[CEU][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes]

mRNA abundance (count:29)

SNP	Gene	Cis/trans	Tissue	Source
rs11236296	XRRA1	cis	Whole Blood	GTEx
rs11236296	XRRA1	cis	lung	GTEx
rs11236296	XRRA1	cis	Esophagus Muscularis	GTEx
rs11236296	XRRA1	cis	parietal	SCAN
rs11236296	XRRA1	cis	Esophagus Mucosa	GTEx
rs11236296	RNF169	cis	lymphoblastoid	seeQTL
rs11236296	XRRA1	cis	Adipose Subcutaneous	GTEx
rs11236296	RP11-147I3.1	cis	Muscle Skeletal	GTEx
rs11236296	XRRA1	cis	Muscle Skeletal	GTEx
rs11236296	XRRA1	cis	lymphoblastoid	seeQTL
rs11236296	RP11-147I3.1	cis	lung	GTEx
rs11236296	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs11236296	XRRA1	cis	lymphoblastoid	GTEx
rs11236296	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs11236296	XRRA1	cis	Artery Tibial	GTEx
rs11236296	RP11-147I3.1	cis	Thyroid	GTEx
rs11236296	XRRA1	cis	Thyroid	GTEx
rs11236296	PLEKHB1	cis	cerebellum	SCAN
rs11236296	XRRA1	cis	cerebellum	SCAN
rs11236296	XRRA1	cis	Stomach	GTEx
rs11236296	KRTAP5-10	cis	parietal	SCAN
rs11236296	RNF169	cis	cerebellum	SCAN
rs11236296	XRRA1	cis	Heart Left Ventricle	GTEx
rs11236296	XRRA1	cis	normal skin	skin_eQTL
rs11236296	RNF169	cis	parietal	SCAN
rs11236296	XRRA1	cis	lesional skin	skin_eQTL
rs11236296	XRRA1	cis	Artery Aorta	GTEx
rs11236296	PAAF1	cis	parietal	SCAN
rs11236296	XRRA1	cis	Nerve Tibial	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74741800-74748000	Enhancers	Fetal Intestine Large	intestine
2	chr11:74742200-74748600	Enhancers	Fetal Intestine Small	intestine
3	chr11:74743000-74751800	Weak transcription	Right Atrium	heart
4	chr11:74743200-74747200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:74743200-74748800	Weak transcription	Spleen	Spleen
6	chr11:74745600-74747200	Weak transcription	K562	blood
7	chr11:74746400-74747600	Enhancers	GM12878-XiMat	blood
8	chr11:74746400-74747800	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:74746400-74748200	Enhancers	Placenta	Placenta
10	chr11:74746600-74747400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:74746600-74747600	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:74746800-74747200	Enhancers	NHEK	skin
13	chr11:74746800-74747400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:74746800-74747400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:74746800-74747400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:74746800-74748000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:74747000-74747200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:74747000-74747200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:74747000-74747400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:74747000-74747400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:74747000-74747400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:74747000-74747400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:74747000-74747400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:74747000-74747400	Enhancers	HepG2	liver
25	chr11:74747000-74747400	Enhancers	HMEC	breast
26	chr11:74747000-74747600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:74747000-74747800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:74747000-74747800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:74747000-74747800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:74747000-74748200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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