Variant report

Variant	rs56194145
Chromosome Location	chr11:74740766-74740767
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74740096..74742646-chr11:74811856..74813625,2	K562	blood:
2	chr11:74732707..74737520-chr11:74738671..74743586,5	MCF-7	breast:
3	chr11:74739170..74741588-chr11:74798850..74800932,2	K562	blood:
4	chr11:74735037..74738076-chr11:74739578..74743137,3	K562	blood:
5	chr11:74740374..74743027-chr11:74944019..74946597,2	K562	blood:

Variant related genes	Relation type
ENSG00000171561	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10793107	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793108	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793112	0.82[AMR][1000 genomes]
rs10899051	0.84[AMR][1000 genomes]
rs10899052	0.84[AMR][1000 genomes]
rs10899053	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899054	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899058	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899059	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899060	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899061	0.82[AMR][1000 genomes]
rs11236281	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236282	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236289	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236290	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236294	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236296	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603294	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12221841	0.82[AMR][1000 genomes]
rs12225372	0.82[AMR][1000 genomes]
rs12225387	0.81[AMR][1000 genomes]
rs12419113	0.82[AMR][1000 genomes]
rs12419929	0.82[AMR][1000 genomes]
rs12575200	0.82[AMR][1000 genomes]
rs12577127	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577614	0.88[AMR][1000 genomes]
rs1371410	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119028	0.84[AMR][1000 genomes]
rs2165162	0.84[AMR][1000 genomes]
rs2165163	0.84[AMR][1000 genomes]
rs4245440	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4387374	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944965	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944968	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944970	0.82[AMR][1000 genomes]
rs59143825	0.82[AMR][1000 genomes]
rs61671395	0.82[AMR][1000 genomes]
rs61894839	0.82[AMR][1000 genomes]
rs7102619	0.83[AMR][1000 genomes]
rs7106757	0.82[AMR][1000 genomes]
rs725460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7396866	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7483351	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787775	0.88[AMR][1000 genomes]
rs9787897	0.84[AMR][1000 genomes]

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs56194145	XRRA1	cis	lung	GTEx
rs56194145	XRRA1	cis	Adipose Subcutaneous	GTEx
rs56194145	XRRA1	cis	Heart Left Ventricle	GTEx
rs56194145	RP11-147I3.1	cis	Muscle Skeletal	GTEx
rs56194145	XRRA1	cis	Stomach	GTEx
rs56194145	XRRA1	cis	Nerve Tibial	GTEx
rs56194145	XRRA1	cis	Artery Tibial	GTEx
rs56194145	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs56194145	XRRA1	cis	Artery Aorta	GTEx
rs56194145	RP11-147I3.1	cis	Thyroid	GTEx
rs56194145	XRRA1	cis	Esophagus Muscularis	GTEx
rs56194145	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs56194145	XRRA1	cis	Muscle Skeletal	GTEx
rs56194145	XRRA1	cis	Esophagus Mucosa	GTEx
rs56194145	XRRA1	cis	Thyroid	GTEx
rs56194145	XRRA1	cis	Whole Blood	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
2	chr11:74734400-74742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:74735200-74741600	Weak transcription	Left Ventricle	heart
4	chr11:74735400-74742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:74736400-74741800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:74736400-74741800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:74736400-74741800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:74736600-74742200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:74737800-74741600	Enhancers	K562	blood
10	chr11:74738200-74743200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:74738600-74743200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:74739000-74742400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:74739200-74743200	Enhancers	NHDF-Ad	bronchial
14	chr11:74739600-74744000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:74739800-74742600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:74739800-74743800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:74740000-74742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:74740000-74742000	Weak transcription	HSMMtube	muscle
19	chr11:74740200-74742800	Weak transcription	Psoas Muscle	Psoas

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