Variant report
| Variant | rs12225865 |
|---|---|
| Chromosome Location | chr11:26062852-26062853 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:26060352..26062895-chr11:26083978..26086894,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10734366 | 1.00[CHB][hapmap] |
| rs10742127 | 1.00[CHB][hapmap] |
| rs10742128 | 1.00[CHB][hapmap] |
| rs10834897 | 1.00[CHB][hapmap] |
| rs10834898 | 1.00[CHB][hapmap] |
| rs11029102 | 0.82[ASN][1000 genomes] |
| rs11029103 | 0.91[ASN][1000 genomes] |
| rs11029104 | 0.91[ASN][1000 genomes] |
| rs11029106 | 0.91[ASN][1000 genomes] |
| rs11029114 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11029115 | 1.00[ASN][1000 genomes] |
| rs1387503 | 1.00[CHB][hapmap] |
| rs1387507 | 1.00[CHB][hapmap] |
| rs6484193 | 1.00[CHB][hapmap] |
| rs7101817 | 1.00[CHB][hapmap] |
| rs7105188 | 1.00[CHB][hapmap] |
| rs7105339 | 1.00[CHB][hapmap] |
| rs7115939 | 1.00[CHB][hapmap] |
| rs7116083 | 1.00[CHB][hapmap] |
| rs7119696 | 1.00[CHB][hapmap] |
| rs7123678 | 1.00[CHB][hapmap] |
| rs988513 | 1.00[CHB][hapmap] |
| rs988514 | 1.00[CHB][hapmap] |
| rs988516 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046507 | chr11:25469712-26111707 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041778 | chr11:25898574-26098141 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26060800-26065400 | Weak transcription | GM12878-XiMat | blood |
