Variant report

Variant	rs11029104
Chromosome Location	chr11:26050403-26050404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10734366	1.00[CHB][hapmap]
rs10742127	1.00[CHB][hapmap]
rs10742128	1.00[CHB][hapmap]
rs10834897	1.00[CHB][hapmap]
rs10834898	1.00[CHB][hapmap]
rs10834914	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029102	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11029103	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029114	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11029115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11029124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029132	1.00[EUR][1000 genomes]
rs11029136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029138	0.84[EUR][1000 genomes]
rs11029139	0.84[EUR][1000 genomes]
rs11029177	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029183	0.92[EUR][1000 genomes]
rs11029184	0.92[EUR][1000 genomes]
rs11029185	0.92[EUR][1000 genomes]
rs11029192	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029194	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029195	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029197	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029198	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029200	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029201	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029203	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029205	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029210	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029243	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029244	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029249	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029250	1.00[AMR][1000 genomes]
rs11029252	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029254	1.00[AMR][1000 genomes]
rs11029255	1.00[AMR][1000 genomes]
rs11029258	1.00[AMR][1000 genomes]
rs11029259	1.00[AMR][1000 genomes]
rs11029260	1.00[AMR][1000 genomes]
rs11029261	1.00[AMR][1000 genomes]
rs11029262	1.00[AMR][1000 genomes]
rs11029263	1.00[AMR][1000 genomes]
rs11029264	1.00[AMR][1000 genomes]
rs11029287	1.00[AMR][1000 genomes]
rs11029288	1.00[AMR][1000 genomes]
rs11029289	1.00[AMR][1000 genomes]
rs11029290	1.00[AMR][1000 genomes]
rs11029291	1.00[AMR][1000 genomes]
rs11029292	1.00[AMR][1000 genomes]
rs11029293	1.00[AMR][1000 genomes]
rs11029294	1.00[AMR][1000 genomes]
rs11029295	1.00[AMR][1000 genomes]
rs11029297	1.00[AMR][1000 genomes]
rs11029298	1.00[AMR][1000 genomes]
rs11029356	1.00[AMR][1000 genomes]
rs11029357	1.00[AMR][1000 genomes]
rs11029358	1.00[AMR][1000 genomes]
rs11029359	1.00[AMR][1000 genomes]
rs11029360	1.00[AMR][1000 genomes]
rs11029361	1.00[AMR][1000 genomes]
rs11029362	1.00[AMR][1000 genomes]
rs11029363	1.00[AMR][1000 genomes]
rs11029364	1.00[AMR][1000 genomes]
rs11029365	1.00[AMR][1000 genomes]
rs11029366	1.00[AMR][1000 genomes]
rs11029367	1.00[AMR][1000 genomes]
rs11029369	1.00[AMR][1000 genomes]
rs11029370	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11029371	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12222393	1.00[AMR][1000 genomes]
rs12222395	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12222406	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12223000	1.00[AMR][1000 genomes]
rs12223211	1.00[AMR][1000 genomes]
rs12223393	1.00[AMR][1000 genomes]
rs12223917	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12224552	0.84[EUR][1000 genomes]
rs12225078	1.00[AMR][1000 genomes]
rs12225865	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1387491	0.84[EUR][1000 genomes]
rs1387492	0.84[EUR][1000 genomes]
rs1387503	1.00[CHB][hapmap]
rs1387507	1.00[CHB][hapmap]
rs2349610	0.84[EUR][1000 genomes]
rs34265487	1.00[AMR][1000 genomes]
rs36087416	1.00[AMR][1000 genomes]
rs6484193	1.00[CHB][hapmap]
rs7101817	1.00[CHB][hapmap]
rs7105188	1.00[CHB][hapmap]
rs7105339	1.00[CHB][hapmap]
rs7115939	1.00[CHB][hapmap]
rs7116083	1.00[CHB][hapmap]
rs7119696	1.00[CHB][hapmap]
rs7123678	1.00[CHB][hapmap]
rs73435502	0.92[EUR][1000 genomes]
rs9633855	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs977800	0.84[EUR][1000 genomes]
rs988513	1.00[CHB][hapmap]
rs988514	1.00[CHB][hapmap]
rs988516	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26046600-26051200	Enhancers	Hela-S3	cervix
2	chr11:26049400-26050600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26049800-26050600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:26050200-26051400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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