Variant report

Variant	rs12222395
Chromosome Location	chr11:26143503-26143504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10501037	0.82[ASN][1000 genomes]
rs10734366	1.00[CHB][hapmap]
rs10742127	1.00[CHB][hapmap]
rs10742128	1.00[CHB][hapmap]
rs10834897	1.00[CHB][hapmap]
rs10834898	1.00[CHB][hapmap]
rs10834914	1.00[AMR][1000 genomes]
rs10834930	1.00[AMR][1000 genomes]
rs10834931	1.00[AMR][1000 genomes]
rs11029102	1.00[AMR][1000 genomes]
rs11029103	1.00[AMR][1000 genomes]
rs11029104	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029106	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs11029115	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029124	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029127	0.82[ASN][1000 genomes]
rs11029128	0.82[ASN][1000 genomes]
rs11029130	0.82[ASN][1000 genomes]
rs11029132	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029133	0.82[ASN][1000 genomes]
rs11029136	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029137	0.82[ASN][1000 genomes]
rs11029138	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029139	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029140	0.82[ASN][1000 genomes]
rs11029142	0.82[ASN][1000 genomes]
rs11029143	0.82[ASN][1000 genomes]
rs11029144	0.82[ASN][1000 genomes]
rs11029145	0.82[ASN][1000 genomes]
rs11029146	0.82[ASN][1000 genomes]
rs11029147	0.82[ASN][1000 genomes]
rs11029148	0.82[ASN][1000 genomes]
rs11029149	0.82[ASN][1000 genomes]
rs11029150	0.82[ASN][1000 genomes]
rs11029151	0.82[ASN][1000 genomes]
rs11029152	0.82[ASN][1000 genomes]
rs11029153	0.82[ASN][1000 genomes]
rs11029154	0.82[ASN][1000 genomes]
rs11029155	0.82[ASN][1000 genomes]
rs11029156	0.82[ASN][1000 genomes]
rs11029157	0.82[ASN][1000 genomes]
rs11029158	0.82[ASN][1000 genomes]
rs11029159	0.82[ASN][1000 genomes]
rs11029160	0.82[ASN][1000 genomes]
rs11029161	0.82[ASN][1000 genomes]
rs11029162	0.82[ASN][1000 genomes]
rs11029163	0.82[ASN][1000 genomes]
rs11029164	0.82[ASN][1000 genomes]
rs11029165	0.82[ASN][1000 genomes]
rs11029166	0.82[ASN][1000 genomes]
rs11029167	0.82[ASN][1000 genomes]
rs11029168	0.82[ASN][1000 genomes]
rs11029169	0.82[ASN][1000 genomes]
rs11029170	0.82[ASN][1000 genomes]
rs11029171	0.82[ASN][1000 genomes]
rs11029172	0.82[ASN][1000 genomes]
rs11029173	0.82[ASN][1000 genomes]
rs11029174	0.82[ASN][1000 genomes]
rs11029175	0.82[ASN][1000 genomes]
rs11029176	0.82[ASN][1000 genomes]
rs11029177	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029178	0.82[ASN][1000 genomes]
rs11029183	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029184	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029185	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029189	0.82[ASN][1000 genomes]
rs11029190	0.82[ASN][1000 genomes]
rs11029191	0.82[ASN][1000 genomes]
rs11029192	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029196	0.82[ASN][1000 genomes]
rs11029197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029199	0.82[ASN][1000 genomes]
rs11029200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029204	0.82[ASN][1000 genomes]
rs11029205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11029244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11029249	1.00[AMR][1000 genomes]
rs11029250	1.00[AMR][1000 genomes]
rs11029252	1.00[AMR][1000 genomes]
rs11029254	1.00[AMR][1000 genomes]
rs11029255	1.00[AMR][1000 genomes]
rs11029258	1.00[AMR][1000 genomes]
rs11029259	1.00[AMR][1000 genomes]
rs11029260	1.00[AMR][1000 genomes]
rs11029261	1.00[AMR][1000 genomes]
rs11029262	1.00[AMR][1000 genomes]
rs11029263	1.00[AMR][1000 genomes]
rs11029264	1.00[AMR][1000 genomes]
rs11029287	1.00[AMR][1000 genomes]
rs11029288	1.00[AMR][1000 genomes]
rs11029289	1.00[AMR][1000 genomes]
rs11029290	1.00[AMR][1000 genomes]
rs11029291	1.00[AMR][1000 genomes]
rs11029292	1.00[AMR][1000 genomes]
rs11029293	1.00[AMR][1000 genomes]
rs11029294	1.00[AMR][1000 genomes]
rs11029295	1.00[AMR][1000 genomes]
rs11029297	1.00[AMR][1000 genomes]
rs11029298	1.00[AMR][1000 genomes]
rs11029356	1.00[AMR][1000 genomes]
rs11029357	1.00[AMR][1000 genomes]
rs11029358	1.00[AMR][1000 genomes]
rs11029359	1.00[AMR][1000 genomes]
rs11029360	1.00[AMR][1000 genomes]
rs11029361	1.00[AMR][1000 genomes]
rs11029362	1.00[AMR][1000 genomes]
rs11029363	1.00[AMR][1000 genomes]
rs11029364	1.00[AMR][1000 genomes]
rs11029365	1.00[AMR][1000 genomes]
rs11029366	1.00[AMR][1000 genomes]
rs11029367	1.00[AMR][1000 genomes]
rs11029369	1.00[AMR][1000 genomes]
rs11029370	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11029371	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11029391	1.00[AMR][1000 genomes]
rs11029395	1.00[AMR][1000 genomes]
rs11029396	1.00[AMR][1000 genomes]
rs11029397	1.00[AMR][1000 genomes]
rs11029400	1.00[AMR][1000 genomes]
rs11029401	1.00[AMR][1000 genomes]
rs11029404	1.00[AMR][1000 genomes]
rs11029407	1.00[AMR][1000 genomes]
rs11029408	1.00[AMR][1000 genomes]
rs11029413	1.00[AMR][1000 genomes]
rs11029415	1.00[AMR][1000 genomes]
rs11029416	1.00[AMR][1000 genomes]
rs11029417	1.00[AMR][1000 genomes]
rs11029418	1.00[AMR][1000 genomes]
rs11029419	1.00[AMR][1000 genomes]
rs11029420	1.00[AMR][1000 genomes]
rs12049868	1.00[AMR][1000 genomes]
rs12221722	1.00[AMR][1000 genomes]
rs12222393	1.00[AMR][1000 genomes]
rs12222406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222677	1.00[AMR][1000 genomes]
rs12222973	1.00[AMR][1000 genomes]
rs12223000	1.00[AMR][1000 genomes]
rs12223107	1.00[AMR][1000 genomes]
rs12223119	1.00[AMR][1000 genomes]
rs12223130	1.00[AMR][1000 genomes]
rs12223211	1.00[AMR][1000 genomes]
rs12223393	1.00[AMR][1000 genomes]
rs12223415	1.00[AMR][1000 genomes]
rs12223917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224552	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12224620	1.00[AMR][1000 genomes]
rs12225078	1.00[AMR][1000 genomes]
rs12225190	1.00[AMR][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387490	0.82[ASN][1000 genomes]
rs1387491	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1387492	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1387503	1.00[CHB][hapmap]
rs1387507	1.00[CHB][hapmap]
rs1489508	0.82[ASN][1000 genomes]
rs1489509	0.82[ASN][1000 genomes]
rs1489510	0.82[ASN][1000 genomes]
rs1489511	0.82[ASN][1000 genomes]
rs16915262	0.82[ASN][1000 genomes]
rs16915268	0.82[ASN][1000 genomes]
rs2349610	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2349611	0.82[ASN][1000 genomes]
rs34265487	1.00[AMR][1000 genomes]
rs36087416	1.00[AMR][1000 genomes]
rs4360660	0.82[ASN][1000 genomes]
rs4572089	0.82[ASN][1000 genomes]
rs59456245	0.82[ASN][1000 genomes]
rs61688636	0.82[ASN][1000 genomes]
rs6484193	1.00[CHB][hapmap]
rs66633054	0.82[ASN][1000 genomes]
rs66648383	0.82[ASN][1000 genomes]
rs66699863	0.82[ASN][1000 genomes]
rs7101817	1.00[CHB][hapmap]
rs7105188	1.00[CHB][hapmap]
rs7105339	1.00[CHB][hapmap]
rs7115939	1.00[CHB][hapmap]
rs7116083	1.00[CHB][hapmap]
rs7119696	1.00[CHB][hapmap]
rs7123678	1.00[CHB][hapmap]
rs72885762	0.82[ASN][1000 genomes]
rs73435407	0.82[ASN][1000 genomes]
rs73435414	0.82[ASN][1000 genomes]
rs73435415	0.82[ASN][1000 genomes]
rs73435418	0.82[ASN][1000 genomes]
rs73435435	0.82[ASN][1000 genomes]
rs73435438	0.82[ASN][1000 genomes]
rs73435442	0.82[ASN][1000 genomes]
rs73435450	0.82[ASN][1000 genomes]
rs73435451	0.82[ASN][1000 genomes]
rs73435502	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935278	0.82[ASN][1000 genomes]
rs7935406	0.82[ASN][1000 genomes]
rs7938817	0.82[ASN][1000 genomes]
rs7952271	0.82[ASN][1000 genomes]
rs9633820	0.82[ASN][1000 genomes]
rs9633821	0.82[ASN][1000 genomes]
rs9633854	0.82[ASN][1000 genomes]
rs9633855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs977800	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs988513	1.00[CHB][hapmap]
rs988514	1.00[CHB][hapmap]
rs988516	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26143200-26143600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26143200-26143600	Enhancers	NHDF-Ad	bronchial

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