Variant report

Variant	rs11029167
Chromosome Location	chr11:26109238-26109239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10501037	1.00[ASN][1000 genomes]
rs10734366	1.00[CHB][hapmap]
rs10742127	1.00[CHB][hapmap]
rs10742128	1.00[CHB][hapmap]
rs10834897	1.00[CHB][hapmap]
rs10834898	1.00[CHB][hapmap]
rs11029114	1.00[CHB][hapmap]
rs11029120	0.82[ASN][1000 genomes]
rs11029127	1.00[ASN][1000 genomes]
rs11029128	1.00[ASN][1000 genomes]
rs11029130	1.00[ASN][1000 genomes]
rs11029132	1.00[ASN][1000 genomes]
rs11029133	1.00[ASN][1000 genomes]
rs11029136	1.00[ASN][1000 genomes]
rs11029137	1.00[ASN][1000 genomes]
rs11029138	1.00[ASN][1000 genomes]
rs11029139	1.00[ASN][1000 genomes]
rs11029140	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029142	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029143	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11029144	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029145	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029146	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029147	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029148	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029149	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029150	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029151	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029152	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029153	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029154	1.00[ASN][1000 genomes]
rs11029155	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029156	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029157	1.00[ASN][1000 genomes]
rs11029158	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029159	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029160	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029161	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029162	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029163	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029164	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029165	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029166	1.00[ASN][1000 genomes]
rs11029168	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029169	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029170	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029171	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029172	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029173	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029174	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029175	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029176	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029177	1.00[ASN][1000 genomes]
rs11029178	1.00[ASN][1000 genomes]
rs11029183	1.00[ASN][1000 genomes]
rs11029184	1.00[ASN][1000 genomes]
rs11029185	1.00[ASN][1000 genomes]
rs11029188	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029189	1.00[ASN][1000 genomes]
rs11029190	1.00[ASN][1000 genomes]
rs11029191	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029192	1.00[ASN][1000 genomes]
rs11029194	1.00[ASN][1000 genomes]
rs11029195	1.00[ASN][1000 genomes]
rs11029196	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029197	1.00[ASN][1000 genomes]
rs11029198	1.00[ASN][1000 genomes]
rs11029199	1.00[ASN][1000 genomes]
rs11029200	1.00[ASN][1000 genomes]
rs11029201	1.00[ASN][1000 genomes]
rs11029203	1.00[ASN][1000 genomes]
rs11029204	1.00[ASN][1000 genomes]
rs11029205	1.00[ASN][1000 genomes]
rs11029210	1.00[ASN][1000 genomes]
rs11029243	0.82[ASN][1000 genomes]
rs11029244	0.82[ASN][1000 genomes]
rs12222395	0.82[ASN][1000 genomes]
rs12222406	0.82[ASN][1000 genomes]
rs12223917	0.82[ASN][1000 genomes]
rs12224552	1.00[ASN][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387490	1.00[ASN][1000 genomes]
rs1387491	1.00[ASN][1000 genomes]
rs1387492	1.00[ASN][1000 genomes]
rs1387503	1.00[CHB][hapmap]
rs1387507	1.00[CHB][hapmap]
rs1489508	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489509	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489510	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489511	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915262	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349610	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2349611	1.00[ASN][1000 genomes]
rs3926027	0.85[EUR][1000 genomes]
rs4360660	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572089	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59456245	1.00[ASN][1000 genomes]
rs61688636	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484193	1.00[CHB][hapmap]
rs66633054	1.00[ASN][1000 genomes]
rs66648383	1.00[ASN][1000 genomes]
rs66699863	1.00[ASN][1000 genomes]
rs7101817	1.00[CHB][hapmap]
rs7105188	1.00[CHB][hapmap]
rs7105339	1.00[CHB][hapmap]
rs7115939	1.00[CHB][hapmap]
rs7116083	1.00[CHB][hapmap]
rs7119696	1.00[CHB][hapmap]
rs7123678	1.00[CHB][hapmap]
rs72885762	1.00[ASN][1000 genomes]
rs73435407	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435414	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435415	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435418	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435435	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435438	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435442	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435450	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435451	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435502	1.00[ASN][1000 genomes]
rs7935278	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935406	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938817	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952271	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633820	1.00[ASN][1000 genomes]
rs9633821	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633854	1.00[ASN][1000 genomes]
rs9633855	1.00[ASN][1000 genomes]
rs977800	1.00[ASN][1000 genomes]
rs988513	1.00[CHB][hapmap]
rs988514	1.00[CHB][hapmap]
rs988516	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv972917	chr11:26104722-26110818	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26106800-26109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:26108600-26109800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:26108800-26109400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:26109000-26109800	Flanking Active TSS	GM12878-XiMat	blood
7	chr11:26109200-26109800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:26109200-26110600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:26109200-26110600	Enhancers	Hela-S3	cervix
10	chr11:26109200-26111200	Enhancers	Primary B cells from cord blood	blood
11	chr11:26109200-26111800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links