Variant report

Variant	rs3926027
Chromosome Location	chr11:26103367-26103368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10734366	1.00[CHB][hapmap]
rs10742127	1.00[CHB][hapmap]
rs10742128	1.00[CHB][hapmap]
rs10742134	0.80[ASN][1000 genomes]
rs10767506	0.80[ASN][1000 genomes]
rs10767508	0.80[ASN][1000 genomes]
rs10767511	0.87[ASN][1000 genomes]
rs10767512	0.87[ASN][1000 genomes]
rs10767515	0.84[AFR][1000 genomes]
rs10834897	1.00[CHB][hapmap]
rs10834898	1.00[CHB][hapmap]
rs10834904	0.80[ASN][1000 genomes]
rs10834912	0.80[ASN][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs11029140	0.85[EUR][1000 genomes]
rs11029142	0.85[EUR][1000 genomes]
rs11029144	0.82[EUR][1000 genomes]
rs11029146	0.82[EUR][1000 genomes]
rs11029148	0.85[EUR][1000 genomes]
rs11029149	0.85[EUR][1000 genomes]
rs11029150	0.85[EUR][1000 genomes]
rs11029151	0.85[EUR][1000 genomes]
rs11029152	0.85[EUR][1000 genomes]
rs11029153	0.85[EUR][1000 genomes]
rs11029155	0.85[EUR][1000 genomes]
rs11029156	0.85[EUR][1000 genomes]
rs11029158	0.85[EUR][1000 genomes]
rs11029159	0.85[EUR][1000 genomes]
rs11029160	0.85[EUR][1000 genomes]
rs11029161	0.85[EUR][1000 genomes]
rs11029163	0.85[EUR][1000 genomes]
rs11029164	0.85[EUR][1000 genomes]
rs11029165	0.85[EUR][1000 genomes]
rs11029167	0.85[EUR][1000 genomes]
rs11029168	0.85[EUR][1000 genomes]
rs11029169	0.85[EUR][1000 genomes]
rs11029170	0.85[EUR][1000 genomes]
rs11029171	0.85[EUR][1000 genomes]
rs11029173	0.85[EUR][1000 genomes]
rs11029174	0.85[EUR][1000 genomes]
rs11029175	0.85[EUR][1000 genomes]
rs11029176	0.85[EUR][1000 genomes]
rs11029188	0.82[EUR][1000 genomes]
rs11029191	0.82[EUR][1000 genomes]
rs11029196	0.82[EUR][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387503	1.00[CHB][hapmap]
rs1387507	1.00[CHB][hapmap]
rs1489506	1.00[ASN][1000 genomes]
rs1489509	0.85[EUR][1000 genomes]
rs1489510	0.85[EUR][1000 genomes]
rs1489511	0.85[EUR][1000 genomes]
rs1552582	0.83[AFR][1000 genomes]
rs16915262	0.85[EUR][1000 genomes]
rs16915268	0.85[EUR][1000 genomes]
rs1826052	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1994547	0.80[ASN][1000 genomes]
rs1994548	0.80[ASN][1000 genomes]
rs1994549	0.80[ASN][1000 genomes]
rs4360660	0.85[EUR][1000 genomes]
rs4391777	0.82[EUR][1000 genomes]
rs4572089	0.85[EUR][1000 genomes]
rs4923339	0.83[AFR][1000 genomes]
rs61688636	0.85[EUR][1000 genomes]
rs6484193	1.00[CHB][hapmap]
rs7101817	1.00[CHB][hapmap]
rs7105188	1.00[CHB][hapmap]
rs7105339	1.00[CHB][hapmap]
rs7115939	1.00[CHB][hapmap]
rs7116083	1.00[CHB][hapmap]
rs7119696	1.00[CHB][hapmap]
rs7123678	1.00[CHB][hapmap]
rs73435407	0.85[EUR][1000 genomes]
rs73435414	0.85[EUR][1000 genomes]
rs73435415	0.85[EUR][1000 genomes]
rs73435418	0.85[EUR][1000 genomes]
rs73435435	0.85[EUR][1000 genomes]
rs73435438	0.85[EUR][1000 genomes]
rs73435442	0.85[EUR][1000 genomes]
rs73435450	0.85[EUR][1000 genomes]
rs73435451	0.85[EUR][1000 genomes]
rs7935278	0.85[EUR][1000 genomes]
rs7935406	0.85[EUR][1000 genomes]
rs7938817	0.85[EUR][1000 genomes]
rs7952271	0.85[EUR][1000 genomes]
rs9633821	0.82[EUR][1000 genomes]
rs988513	1.00[CHB][hapmap]
rs988514	1.00[CHB][hapmap]
rs988516	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26102000-26106200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26102400-26106400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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