Variant report

Variant	rs4923339
Chromosome Location	chr11:26097738-26097739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10501037	0.90[EUR][1000 genomes]
rs10732480	0.85[AMR][1000 genomes]
rs10734369	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10734371	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10742133	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10742134	0.82[EUR][1000 genomes]
rs10767505	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10767506	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10767508	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10767511	0.82[EUR][1000 genomes]
rs10767512	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10767515	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10834904	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10834912	0.82[EUR][1000 genomes]
rs11029130	0.90[EUR][1000 genomes]
rs11029133	0.90[EUR][1000 genomes]
rs11029137	0.82[EUR][1000 genomes]
rs1472014	0.83[AMR][1000 genomes]
rs1489501	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1489502	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1489506	0.87[AFR][1000 genomes]
rs1552582	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1826052	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1994547	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1994548	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1994549	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3926027	0.83[AFR][1000 genomes]
rs59456245	0.90[EUR][1000 genomes]
rs7131491	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72885762	0.90[EUR][1000 genomes]
rs7927402	0.81[AMR][1000 genomes]
rs7940010	0.81[AMR][1000 genomes]
rs7942563	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26094600-26099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:26094600-26100000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26096000-26101600	Weak transcription	Fetal Kidney	kidney
4	chr11:26096600-26102000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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