Variant report

Variant	rs1489506
Chromosome Location	chr11:26126773-26126774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10732480	0.80[EUR][1000 genomes]
rs10734366	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10734369	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10734371	0.82[EUR][1000 genomes]
rs10742127	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10742128	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10742133	0.82[EUR][1000 genomes]
rs10742134	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10767505	0.82[EUR][1000 genomes]
rs10767506	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10767508	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10767511	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767512	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767515	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10834897	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10834898	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10834904	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10834912	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs11029127	0.81[EUR][1000 genomes]
rs11029128	0.81[EUR][1000 genomes]
rs11029137	0.87[EUR][1000 genomes]
rs11029253	0.87[EUR][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387490	0.85[EUR][1000 genomes]
rs1387503	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1387507	1.00[CEU][hapmap]
rs1489501	0.84[EUR][1000 genomes]
rs1489502	0.84[EUR][1000 genomes]
rs1552582	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1586607	0.82[EUR][1000 genomes]
rs1826052	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1994547	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1994548	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1994549	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3926027	1.00[ASN][1000 genomes]
rs4923339	0.87[AFR][1000 genomes]
rs6484193	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs66633054	0.81[EUR][1000 genomes]
rs66648383	0.81[EUR][1000 genomes]
rs66699863	0.80[EUR][1000 genomes]
rs7101817	1.00[CEU][hapmap]
rs7105188	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7105339	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7115939	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7116083	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7119696	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7123678	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs7131491	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7927402	0.82[EUR][1000 genomes]
rs7927514	0.82[EUR][1000 genomes]
rs7942563	0.82[EUR][1000 genomes]
rs988513	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs988514	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs988515	1.00[CEU][hapmap]
rs988516	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26120000-26130200	Weak transcription	Fetal Lung	lung
2	chr11:26124200-26127800	Weak transcription	Primary B cells from cord blood	blood

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