Variant report

Variant	rs11029253
Chromosome Location	chr11:26163242-26163243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10732480	0.84[EUR][1000 genomes]
rs10734371	0.86[EUR][1000 genomes]
rs10742133	0.86[EUR][1000 genomes]
rs10742134	0.88[EUR][1000 genomes]
rs10767505	0.86[EUR][1000 genomes]
rs10767506	0.88[EUR][1000 genomes]
rs10767508	0.88[EUR][1000 genomes]
rs10767511	0.88[EUR][1000 genomes]
rs10767512	0.88[EUR][1000 genomes]
rs10767515	0.81[EUR][1000 genomes]
rs10834904	0.88[EUR][1000 genomes]
rs10834912	0.87[EUR][1000 genomes]
rs10834914	0.93[ASN][1000 genomes]
rs10834915	1.00[ASN][1000 genomes]
rs11029127	0.84[EUR][1000 genomes]
rs11029128	0.84[EUR][1000 genomes]
rs11029249	0.93[ASN][1000 genomes]
rs11029250	0.83[ASN][1000 genomes]
rs11029252	0.93[ASN][1000 genomes]
rs1387490	0.86[EUR][1000 genomes]
rs1489501	0.88[EUR][1000 genomes]
rs1489502	0.88[EUR][1000 genomes]
rs1489506	0.87[EUR][1000 genomes]
rs1586607	0.86[EUR][1000 genomes]
rs1994547	0.88[EUR][1000 genomes]
rs1994548	0.88[EUR][1000 genomes]
rs1994549	0.88[EUR][1000 genomes]
rs4391777	0.98[ASN][1000 genomes]
rs56175671	0.82[EUR][1000 genomes]
rs66633054	0.84[EUR][1000 genomes]
rs66648383	0.84[EUR][1000 genomes]
rs66699863	0.83[EUR][1000 genomes]
rs72887634	0.82[EUR][1000 genomes]
rs7927402	0.86[EUR][1000 genomes]
rs7927514	0.86[EUR][1000 genomes]
rs7942563	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26160400-26165000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:26162800-26167000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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