Variant report

Variant	rs66699863
Chromosome Location	chr11:26090156-26090157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10501036	0.86[EUR][1000 genomes]
rs10501037	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732480	0.89[EUR][1000 genomes]
rs10734371	0.91[EUR][1000 genomes]
rs10742133	0.91[EUR][1000 genomes]
rs10742134	0.93[EUR][1000 genomes]
rs10767505	0.91[EUR][1000 genomes]
rs10767506	0.93[EUR][1000 genomes]
rs10767508	0.93[EUR][1000 genomes]
rs10767511	0.93[EUR][1000 genomes]
rs10767512	0.93[EUR][1000 genomes]
rs10834904	0.93[EUR][1000 genomes]
rs11029120	0.82[ASN][1000 genomes]
rs11029121	0.80[EUR][1000 genomes]
rs11029127	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029128	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029130	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029132	1.00[ASN][1000 genomes]
rs11029133	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029136	1.00[ASN][1000 genomes]
rs11029137	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029138	1.00[ASN][1000 genomes]
rs11029139	1.00[ASN][1000 genomes]
rs11029140	1.00[ASN][1000 genomes]
rs11029142	1.00[ASN][1000 genomes]
rs11029143	1.00[ASN][1000 genomes]
rs11029144	1.00[ASN][1000 genomes]
rs11029145	1.00[ASN][1000 genomes]
rs11029146	1.00[ASN][1000 genomes]
rs11029147	1.00[ASN][1000 genomes]
rs11029148	1.00[ASN][1000 genomes]
rs11029149	1.00[ASN][1000 genomes]
rs11029150	1.00[ASN][1000 genomes]
rs11029151	1.00[ASN][1000 genomes]
rs11029152	1.00[ASN][1000 genomes]
rs11029153	1.00[ASN][1000 genomes]
rs11029154	1.00[ASN][1000 genomes]
rs11029155	1.00[ASN][1000 genomes]
rs11029156	1.00[ASN][1000 genomes]
rs11029157	1.00[ASN][1000 genomes]
rs11029158	1.00[ASN][1000 genomes]
rs11029159	1.00[ASN][1000 genomes]
rs11029160	1.00[ASN][1000 genomes]
rs11029161	1.00[ASN][1000 genomes]
rs11029162	1.00[ASN][1000 genomes]
rs11029163	1.00[ASN][1000 genomes]
rs11029164	1.00[ASN][1000 genomes]
rs11029165	1.00[ASN][1000 genomes]
rs11029166	1.00[ASN][1000 genomes]
rs11029167	1.00[ASN][1000 genomes]
rs11029168	1.00[ASN][1000 genomes]
rs11029169	1.00[ASN][1000 genomes]
rs11029170	1.00[ASN][1000 genomes]
rs11029171	1.00[ASN][1000 genomes]
rs11029172	1.00[ASN][1000 genomes]
rs11029173	1.00[ASN][1000 genomes]
rs11029174	1.00[ASN][1000 genomes]
rs11029175	1.00[ASN][1000 genomes]
rs11029176	1.00[ASN][1000 genomes]
rs11029177	1.00[ASN][1000 genomes]
rs11029178	1.00[ASN][1000 genomes]
rs11029183	1.00[ASN][1000 genomes]
rs11029184	1.00[ASN][1000 genomes]
rs11029185	1.00[ASN][1000 genomes]
rs11029188	0.92[ASN][1000 genomes]
rs11029189	1.00[ASN][1000 genomes]
rs11029190	1.00[ASN][1000 genomes]
rs11029191	1.00[ASN][1000 genomes]
rs11029192	1.00[ASN][1000 genomes]
rs11029194	1.00[ASN][1000 genomes]
rs11029195	1.00[ASN][1000 genomes]
rs11029196	1.00[ASN][1000 genomes]
rs11029197	1.00[ASN][1000 genomes]
rs11029198	1.00[ASN][1000 genomes]
rs11029199	1.00[ASN][1000 genomes]
rs11029200	1.00[ASN][1000 genomes]
rs11029201	1.00[ASN][1000 genomes]
rs11029203	1.00[ASN][1000 genomes]
rs11029204	1.00[ASN][1000 genomes]
rs11029205	1.00[ASN][1000 genomes]
rs11029210	1.00[ASN][1000 genomes]
rs11029243	0.82[ASN][1000 genomes]
rs11029244	0.82[ASN][1000 genomes]
rs11029253	0.83[EUR][1000 genomes]
rs12222395	0.82[ASN][1000 genomes]
rs12222406	0.82[ASN][1000 genomes]
rs12223917	0.82[ASN][1000 genomes]
rs12224552	1.00[ASN][1000 genomes]
rs1387490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387491	1.00[ASN][1000 genomes]
rs1387492	1.00[ASN][1000 genomes]
rs1489501	0.93[EUR][1000 genomes]
rs1489502	0.93[EUR][1000 genomes]
rs1489506	0.80[EUR][1000 genomes]
rs1489508	1.00[ASN][1000 genomes]
rs1489509	1.00[ASN][1000 genomes]
rs1489510	1.00[ASN][1000 genomes]
rs1489511	1.00[ASN][1000 genomes]
rs1586607	0.91[EUR][1000 genomes]
rs16915262	1.00[ASN][1000 genomes]
rs16915268	1.00[ASN][1000 genomes]
rs17242984	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17242991	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17243026	0.81[EUR][1000 genomes]
rs17308726	0.86[EUR][1000 genomes]
rs17308754	0.81[EUR][1000 genomes]
rs17308761	0.81[EUR][1000 genomes]
rs1826053	0.82[EUR][1000 genomes]
rs1994547	0.93[EUR][1000 genomes]
rs1994548	0.93[EUR][1000 genomes]
rs1994549	0.93[EUR][1000 genomes]
rs2349610	1.00[ASN][1000 genomes]
rs2349611	1.00[ASN][1000 genomes]
rs4360660	1.00[ASN][1000 genomes]
rs4572089	1.00[ASN][1000 genomes]
rs56099303	0.84[EUR][1000 genomes]
rs59456245	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61688636	1.00[ASN][1000 genomes]
rs66470744	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66633054	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66648383	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67802819	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72885762	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72885785	0.81[EUR][1000 genomes]
rs72885787	0.81[EUR][1000 genomes]
rs73435407	1.00[ASN][1000 genomes]
rs73435414	1.00[ASN][1000 genomes]
rs73435415	1.00[ASN][1000 genomes]
rs73435418	1.00[ASN][1000 genomes]
rs73435435	1.00[ASN][1000 genomes]
rs73435438	1.00[ASN][1000 genomes]
rs73435442	1.00[ASN][1000 genomes]
rs73435450	1.00[ASN][1000 genomes]
rs73435451	1.00[ASN][1000 genomes]
rs73435502	1.00[ASN][1000 genomes]
rs7927402	0.91[EUR][1000 genomes]
rs7927514	0.91[EUR][1000 genomes]
rs7935278	1.00[ASN][1000 genomes]
rs7935406	1.00[ASN][1000 genomes]
rs7938817	1.00[ASN][1000 genomes]
rs7942563	0.91[EUR][1000 genomes]
rs7952271	1.00[ASN][1000 genomes]
rs9633820	1.00[ASN][1000 genomes]
rs9633821	1.00[ASN][1000 genomes]
rs9633854	1.00[ASN][1000 genomes]
rs9633855	1.00[ASN][1000 genomes]
rs977800	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv972958	chr11:26087208-26094251	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26079600-26091600	Weak transcription	Fetal Kidney	kidney
2	chr11:26082400-26094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26090000-26091000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links