Variant report

Variant	rs56099303
Chromosome Location	chr11:26080917-26080918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10501036	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10734371	0.82[EUR][1000 genomes]
rs10742133	0.82[EUR][1000 genomes]
rs10767505	0.82[EUR][1000 genomes]
rs11029121	0.91[EUR][1000 genomes]
rs11029127	0.85[EUR][1000 genomes]
rs11029128	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1586607	0.82[EUR][1000 genomes]
rs17242984	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17242991	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17243026	0.92[EUR][1000 genomes]
rs17308726	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17308754	0.92[EUR][1000 genomes]
rs17308761	0.92[EUR][1000 genomes]
rs17308782	0.90[EUR][1000 genomes]
rs55850236	0.82[EUR][1000 genomes]
rs56175671	0.86[EUR][1000 genomes]
rs56288222	0.90[EUR][1000 genomes]
rs59902475	0.88[EUR][1000 genomes]
rs66470744	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66633054	0.85[EUR][1000 genomes]
rs66648383	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66699863	0.84[EUR][1000 genomes]
rs67802819	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885785	0.92[EUR][1000 genomes]
rs72885787	0.92[EUR][1000 genomes]
rs72887618	0.83[EUR][1000 genomes]
rs72887620	0.83[EUR][1000 genomes]
rs72887634	0.86[EUR][1000 genomes]
rs7927402	0.82[EUR][1000 genomes]
rs7927514	0.82[EUR][1000 genomes]
rs7942563	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26079600-26091600	Weak transcription	Fetal Kidney	kidney
2	chr11:26080800-26081200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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