Variant report

Variant	rs72887618
Chromosome Location	chr11:26132806-26132807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501036	0.85[EUR][1000 genomes]
rs17242984	0.85[EUR][1000 genomes]
rs17242991	0.85[EUR][1000 genomes]
rs17243026	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308726	0.85[EUR][1000 genomes]
rs17308754	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308761	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308782	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56099303	0.83[EUR][1000 genomes]
rs56175671	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56288222	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59902475	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66470744	0.85[EUR][1000 genomes]
rs67802819	0.85[EUR][1000 genomes]
rs72885785	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72885787	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72887620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887634	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26128600-26133600	Weak transcription	GM12878-XiMat	blood
2	chr11:26129400-26133800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:26130800-26135200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26131400-26134000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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