Variant report

Variant	rs17308782
Chromosome Location	chr11:26134446-26134447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501036	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029121	0.86[EUR][1000 genomes]
rs11029127	0.80[EUR][1000 genomes]
rs11029128	0.80[EUR][1000 genomes]
rs1387490	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1387507	0.81[CEU][hapmap]
rs17242984	0.92[EUR][1000 genomes]
rs17242991	0.92[EUR][1000 genomes]
rs17243005	0.82[EUR][1000 genomes]
rs17243026	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17308726	0.92[EUR][1000 genomes]
rs17308754	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17308761	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075765	0.91[CEU][hapmap]
rs56099303	0.90[EUR][1000 genomes]
rs56175671	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56288222	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59902475	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66470744	0.92[EUR][1000 genomes]
rs66633054	0.80[EUR][1000 genomes]
rs66648383	0.80[EUR][1000 genomes]
rs67802819	0.92[EUR][1000 genomes]
rs72885785	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72885787	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72887618	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72887620	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72887634	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26130800-26135200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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