Variant report

Variant	rs4075765
Chromosome Location	chr11:26209271-26209272
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:26209184-26209527	T-47D	breast:	n/a	n/a
2	MAFK	chr11:26209262-26209841	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:26209174-26209550	HepG2	liver:	n/a	n/a
4	HDAC2	chr11:26209250-26209515	HepG2	liver:	n/a	n/a
5	JUND	chr11:26208980-26210395	Hela-S3	cervix:	n/a	chr11:26210225-26210234
6	CEBPB	chr11:26208978-26209590	HepG2	liver:	n/a	chr11:26209389-26209400 chr11:26209181-26209194
7	RCOR1	chr11:26208983-26209599	Hela-S3	cervix:	n/a	n/a
8	STAT3	chr11:26209025-26209583	Hela-S3	cervix:	n/a	n/a
9	FOSL2	chr11:26209136-26209630	SK-N-SH	brain:	n/a	n/a
10	BRCA1	chr11:26208803-26209572	Hela-S3	cervix:	n/a	n/a
11	SMC3	chr11:26209209-26209557	Hela-S3	cervix:	n/a	n/a
12	SRF	chr11:26209219-26209508	HepG2	liver:	n/a	chr11:26209335-26209353
13	CEBPD	chr11:26209226-26209464	HepG2	liver:	n/a	chr11:26209390-26209401
14	MYC	chr11:26209258-26209502	MCF10A-Er-Src	breast:	n/a	n/a
15	MAFK	chr11:26208887-26209920	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr11:26209170-26209517	A549	lung:	n/a	chr11:26209389-26209400 chr11:26209181-26209194
17	EP300	chr11:26209146-26209506	HepG2	liver:	n/a	n/a
18	FOS	chr11:26209254-26209586	MCF10A-Er-Src	breast:	n/a	n/a
19	ARID3A	chr11:26209223-26209581	HepG2	liver:	n/a	n/a
20	TBP	chr11:26209025-26209566	Hela-S3	cervix:	n/a	n/a
21	CEBPB	chr11:26209054-26209690	MCF-7	breast:	n/a	chr11:26209389-26209400 chr11:26209181-26209194
22	CEBPB	chr11:26209258-26209484	HepG2	liver:	n/a	chr11:26209389-26209400
23	CHD2	chr11:26209208-26209565	Hela-S3	cervix:	n/a	n/a
24	SP1	chr11:26209163-26209588	A549	lung:	n/a	n/a
25	CEBPB	chr11:26209207-26209561	A549	lung:	n/a	chr11:26209389-26209400
26	CEBPB	chr11:26209172-26209593	IMR90	lung:	n/a	chr11:26209389-26209400 chr11:26209181-26209194
27	POLR2A	chr11:26209130-26209681	MCF10A-Er-Src	breast:	n/a	n/a
28	USF2	chr11:26209244-26209496	Hela-S3	cervix:	n/a	n/a
29	FOXA1	chr11:26209252-26209580	HepG2	liver:	n/a	n/a
30	FOS	chr11:26209258-26209601	MCF10A-Er-Src	breast:	n/a	n/a
31	JUN	chr11:26209176-26210263	Hela-S3	cervix:	n/a	chr11:26210225-26210234
32	CEBPB	chr11:26209051-26209609	A549	lung:	n/a	chr11:26209389-26209400 chr11:26209181-26209194
33	TEAD4	chr11:26209108-26209602	SK-N-SH	brain:	n/a	n/a
34	SMC3	chr11:26209226-26209514	HepG2	liver:	n/a	n/a
35	FOXA2	chr11:26209234-26209523	HepG2	liver:	n/a	n/a
36	GATA3	chr11:26209134-26209543	T-47D	breast:	n/a	chr11:26209287-26209294 chr11:26209280-26209301 chr11:26209287-26209294 chr11:26209287-26209294
37	MAX	chr11:26209149-26210348	Hela-S3	cervix:	n/a	n/a
38	PBX3	chr11:26209146-26209590	SK-N-SH	brain:	n/a	n/a
39	CEBPB	chr11:26209245-26209468	H1-hESC	embryonic stem cell:	n/a	chr11:26209389-26209400
40	TEAD4	chr11:26209112-26209556	HepG2	liver:	n/a	n/a
41	FOS	chr11:26209235-26209535	Hela-S3	cervix:	n/a	n/a
42	FOS	chr11:26209256-26209576	MCF10A-Er-Src	breast:	n/a	n/a
43	POLR2A	chr11:26209205-26209553	SK-N-SH	brain:	n/a	n/a
44	TCF12	chr11:26209225-26209549	A549	lung:	n/a	n/a
45	STAT3	chr11:26209032-26209563	MCF10A-Er-Src	breast:	n/a	n/a
46	CEBPB	chr11:26208826-26210467	Hela-S3	cervix:	n/a	chr11:26210069-26210082 chr11:26209389-26209400 chr11:26209181-26209194 chr11:26210070-26210081
47	FOXA1	chr11:26209201-26209594	HepG2	liver:	n/a	n/a
48	RFX5	chr11:26209011-26209590	Hela-S3	cervix:	n/a	n/a
49	EP300	chr11:26209232-26209517	HepG2	liver:	n/a	n/a
50	SP1	chr11:26209167-26209598	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000255243	TF binding region
ANO3	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11604717	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1387507	0.81[CEU][hapmap]
rs17243204	0.86[AMR][1000 genomes]
rs17308943	0.86[AMR][1000 genomes]
rs17308964	0.86[AMR][1000 genomes]
rs55788608	0.86[AMR][1000 genomes]
rs56186968	0.86[AMR][1000 genomes]
rs72872737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72872775	0.86[AMR][1000 genomes]
rs72872794	0.86[AMR][1000 genomes]
rs72887674	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72887688	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72889643	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26207400-26211400	Enhancers	NHLF	lung
2	chr11:26207600-26210600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26207800-26210200	Enhancers	NHDF-Ad	bronchial
4	chr11:26207800-26210600	Enhancers	NHEK	skin
5	chr11:26208000-26210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:26208000-26211600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:26208000-26211600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:26208200-26211000	Enhancers	Hela-S3	cervix
9	chr11:26208400-26209800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:26208400-26211000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:26208800-26209400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:26208800-26209400	Flanking Active TSS	Osteobl	bone
13	chr11:26208800-26210200	Enhancers	Liver	Liver
14	chr11:26209000-26209400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr11:26209000-26209400	Enhancers	HepG2	liver
16	chr11:26209000-26209800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:26209200-26209600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:26209200-26210000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:26209200-26210600	Enhancers	HMEC	breast
20	chr11:26209200-26211800	Enhancers	Fetal Lung	lung

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