Variant report

Variant	rs17243204
Chromosome Location	chr11:26260899-26260900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12270830	0.84[EUR][1000 genomes]
rs1381187	0.86[EUR][1000 genomes]
rs1387507	0.81[CEU][hapmap]
rs1461396	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17243217	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17243231	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17308943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308964	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4075765	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs55788608	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55996110	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56186968	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72872737	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72872775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72872794	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72887674	0.86[AMR][1000 genomes]
rs72887688	0.86[AMR][1000 genomes]
rs72889643	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3371500	chr11:26257976-26261674	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26260800-26261000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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