Variant report

Variant	rs17243231
Chromosome Location	chr11:26277412-26277413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12270830	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1381187	0.94[EUR][1000 genomes]
rs1461396	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17243204	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17243217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308943	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17308964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55788608	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55996110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56186968	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72872775	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72872794	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26275800-26290600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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