Variant report

Variant	rs72889643
Chromosome Location	chr11:26236292-26236293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11604717	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17243204	0.86[AMR][1000 genomes]
rs17308943	0.86[AMR][1000 genomes]
rs17308964	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4075765	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55788608	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56186968	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72872737	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72872775	0.86[AMR][1000 genomes]
rs72872794	0.86[AMR][1000 genomes]
rs72887674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72887688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26219800-26240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26231000-26239400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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