Variant report

Variant	rs11604717
Chromosome Location	chr11:26180662-26180663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4075765	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72872737	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72887674	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72887688	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72889643	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11604717	PRAMEF7	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26179000-26181400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:26179800-26181000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:26180200-26180800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:26180200-26181000	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links