Variant report

Variant	rs11029121
Chromosome Location	chr11:26085441-26085442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26060352..26062895-chr11:26083978..26086894,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10501036	0.94[EUR][1000 genomes]
rs10732480	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10734367	0.80[AMR][1000 genomes]
rs10734371	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10742131	0.80[AMR][1000 genomes]
rs10742133	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10742134	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767505	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10767506	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767508	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767511	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767512	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10834904	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11029127	0.81[EUR][1000 genomes]
rs11029128	0.81[EUR][1000 genomes]
rs11029135	1.00[ASN][1000 genomes]
rs11029193	1.00[ASN][1000 genomes]
rs11029202	1.00[ASN][1000 genomes]
rs11029251	1.00[ASN][1000 genomes]
rs12271235	1.00[ASN][1000 genomes]
rs1387507	0.81[CEU][hapmap]
rs1489501	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1489502	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1489503	1.00[ASN][1000 genomes]
rs1489504	1.00[ASN][1000 genomes]
rs1489507	1.00[ASN][1000 genomes]
rs1586607	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17242984	0.94[EUR][1000 genomes]
rs17242991	0.94[EUR][1000 genomes]
rs17243026	0.89[EUR][1000 genomes]
rs17308726	0.94[EUR][1000 genomes]
rs17308754	0.89[EUR][1000 genomes]
rs17308761	0.89[EUR][1000 genomes]
rs17308782	0.86[EUR][1000 genomes]
rs1826053	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1994547	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994548	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994549	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3103401	1.00[ASN][1000 genomes]
rs3114678	1.00[ASN][1000 genomes]
rs3114680	1.00[ASN][1000 genomes]
rs4075765	0.91[CEU][hapmap]
rs56099303	0.91[EUR][1000 genomes]
rs56175671	0.83[EUR][1000 genomes]
rs56288222	0.86[EUR][1000 genomes]
rs59902475	0.85[EUR][1000 genomes]
rs6484195	1.00[ASN][1000 genomes]
rs66470744	0.94[EUR][1000 genomes]
rs66633054	0.81[EUR][1000 genomes]
rs66648383	0.81[EUR][1000 genomes]
rs66699863	0.80[EUR][1000 genomes]
rs67802819	0.94[EUR][1000 genomes]
rs7131491	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72885785	0.89[EUR][1000 genomes]
rs72885787	0.89[EUR][1000 genomes]
rs72887634	0.83[EUR][1000 genomes]
rs7927402	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7927514	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7930886	1.00[ASN][1000 genomes]
rs7942563	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26079600-26091600	Weak transcription	Fetal Kidney	kidney
2	chr11:26082400-26094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26084000-26086000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26084400-26086600	Enhancers	Primary B cells from cord blood	blood
5	chr11:26084800-26086000	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:26085400-26086000	Enhancers	GM12878-XiMat	blood

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