Variant report

Variant	rs67802819
Chromosome Location	chr11:26091447-26091448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10501036	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10742134	0.82[EUR][1000 genomes]
rs10767506	0.82[EUR][1000 genomes]
rs10767508	0.82[EUR][1000 genomes]
rs10767511	0.82[EUR][1000 genomes]
rs10767512	0.82[EUR][1000 genomes]
rs10834904	0.82[EUR][1000 genomes]
rs11029121	0.94[EUR][1000 genomes]
rs11029127	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11029128	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1387490	0.80[EUR][1000 genomes]
rs1489501	0.82[EUR][1000 genomes]
rs1489502	0.82[EUR][1000 genomes]
rs17242984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17242991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17243026	0.95[EUR][1000 genomes]
rs17308726	1.00[EUR][1000 genomes]
rs17308754	0.95[EUR][1000 genomes]
rs17308761	0.95[EUR][1000 genomes]
rs17308782	0.92[EUR][1000 genomes]
rs1994547	0.82[EUR][1000 genomes]
rs1994548	0.82[EUR][1000 genomes]
rs1994549	0.82[EUR][1000 genomes]
rs55850236	0.84[EUR][1000 genomes]
rs56099303	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56175671	0.88[EUR][1000 genomes]
rs56288222	0.92[EUR][1000 genomes]
rs59902475	0.91[EUR][1000 genomes]
rs66470744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66633054	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66648383	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66699863	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72885785	0.95[EUR][1000 genomes]
rs72885787	0.95[EUR][1000 genomes]
rs72887618	0.85[EUR][1000 genomes]
rs72887620	0.85[EUR][1000 genomes]
rs72887634	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv972958	chr11:26087208-26094251	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26079600-26091600	Weak transcription	Fetal Kidney	kidney
2	chr11:26082400-26094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26091000-26094000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links