Variant report
| Variant | rs17243026 |
|---|---|
| Chromosome Location | chr11:26120744-26120745 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10501036 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11029121 | 0.89[EUR][1000 genomes] |
| rs11029127 | 0.82[EUR][1000 genomes] |
| rs11029128 | 0.82[EUR][1000 genomes] |
| rs1387490 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1387507 | 0.81[CEU][hapmap] |
| rs17242984 | 0.95[EUR][1000 genomes] |
| rs17242991 | 0.95[EUR][1000 genomes] |
| rs17243005 | 0.84[EUR][1000 genomes] |
| rs17308726 | 0.95[EUR][1000 genomes] |
| rs17308754 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17308761 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17308782 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4075765 | 0.91[CEU][hapmap] |
| rs56099303 | 0.92[EUR][1000 genomes] |
| rs56175671 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56288222 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs59902475 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs66470744 | 0.95[EUR][1000 genomes] |
| rs66633054 | 0.82[EUR][1000 genomes] |
| rs66648383 | 0.82[EUR][1000 genomes] |
| rs66699863 | 0.81[EUR][1000 genomes] |
| rs67802819 | 0.95[EUR][1000 genomes] |
| rs72885785 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72885787 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887618 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72887620 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72887634 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26120000-26130200 | Weak transcription | Fetal Lung | lung |
| 2 | chr11:26120200-26121000 | Weak transcription | Primary B cells from cord blood | blood |
