Variant report

Variant	rs17243005
Chromosome Location	chr11:26102394-26102395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501037	0.84[EUR][1000 genomes]
rs10734366	0.91[CEU][hapmap]
rs10742127	0.91[CEU][hapmap]
rs10742128	0.91[CEU][hapmap]
rs10834897	0.91[CEU][hapmap]
rs10834898	0.84[CEU][hapmap]
rs11029130	0.84[EUR][1000 genomes]
rs11029133	0.84[EUR][1000 genomes]
rs11029137	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1387503	0.91[CEU][hapmap]
rs1387507	0.89[CEU][hapmap]
rs17243026	0.84[EUR][1000 genomes]
rs17308754	0.84[EUR][1000 genomes]
rs17308761	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17308782	0.82[EUR][1000 genomes]
rs55850236	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56288222	0.82[EUR][1000 genomes]
rs59456245	0.84[EUR][1000 genomes]
rs59902475	0.81[EUR][1000 genomes]
rs6484193	0.91[CEU][hapmap]
rs7101817	0.86[CEU][hapmap]
rs7105188	0.91[CEU][hapmap]
rs7105339	0.91[CEU][hapmap]
rs7115939	0.91[CEU][hapmap]
rs7116083	0.91[CEU][hapmap]
rs7119696	0.89[CEU][hapmap]
rs7123678	0.84[CEU][hapmap]
rs72885762	0.84[EUR][1000 genomes]
rs72885785	0.84[EUR][1000 genomes]
rs72885787	0.84[EUR][1000 genomes]
rs988513	0.91[CEU][hapmap]
rs988514	0.90[CEU][hapmap]
rs988515	0.90[CEU][hapmap]
rs988516	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26100400-26102400	Enhancers	Hela-S3	cervix
2	chr11:26101200-26102400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:26101800-26103200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:26102000-26106200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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