Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10501036	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11029121	0.89[EUR][1000 genomes]
rs11029127	0.82[EUR][1000 genomes]
rs11029128	0.82[EUR][1000 genomes]
rs1387490	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17242984	0.95[EUR][1000 genomes]
rs17242991	0.95[EUR][1000 genomes]
rs17243005	0.84[EUR][1000 genomes]
rs17243026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308726	0.95[EUR][1000 genomes]
rs17308754	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308761	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17308782	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56099303	0.92[EUR][1000 genomes]
rs56175671	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56288222	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59902475	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66470744	0.95[EUR][1000 genomes]
rs66633054	0.82[EUR][1000 genomes]
rs66648383	0.82[EUR][1000 genomes]
rs66699863	0.81[EUR][1000 genomes]
rs67802819	0.95[EUR][1000 genomes]
rs72885787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887618	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72887620	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72887634	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv972917	chr11:26104722-26110818	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:26106200-26108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:26106800-26109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:26107000-26108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:26107200-26108800	Enhancers	Primary B cells from cord blood	blood
8	chr11:26107400-26108800	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:26107600-26108600	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:26107800-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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