Variant report

Variant	rs1489501
Chromosome Location	chr11:26082951-26082952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10501036	0.82[EUR][1000 genomes]
rs10501037	0.80[EUR][1000 genomes]
rs10732479	1.00[JPT][hapmap]
rs10732480	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10734366	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10734367	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10734369	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10734371	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742127	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10742128	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10742131	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10742133	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742134	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10767505	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767506	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10767508	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10767511	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10767512	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10767515	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10834897	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834898	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs11029121	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11029127	0.94[EUR][1000 genomes]
rs11029128	0.94[EUR][1000 genomes]
rs11029130	0.80[EUR][1000 genomes]
rs11029133	0.80[EUR][1000 genomes]
rs11029253	0.88[EUR][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs12785755	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12803371	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12803860	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1387490	0.88[EUR][1000 genomes]
rs1387503	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1387506	1.00[JPT][hapmap]
rs1387507	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472014	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1489502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489506	0.84[EUR][1000 genomes]
rs1552582	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1586607	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17242984	0.82[EUR][1000 genomes]
rs17242991	0.82[EUR][1000 genomes]
rs17308726	0.82[EUR][1000 genomes]
rs1826052	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1826053	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1979623	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1979624	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1994547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994549	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2349795	0.83[AFR][1000 genomes]
rs2349796	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4075765	0.83[CEU][hapmap]
rs4923339	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59456245	0.80[EUR][1000 genomes]
rs6484193	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs66470744	0.82[EUR][1000 genomes]
rs66633054	0.94[EUR][1000 genomes]
rs66648383	0.94[EUR][1000 genomes]
rs66699863	0.93[EUR][1000 genomes]
rs67802819	0.82[EUR][1000 genomes]
rs7101817	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7102366	0.91[ASN][1000 genomes]
rs7105188	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7105339	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7114213	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7115939	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7116083	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7119696	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7123678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7131491	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72885762	0.80[EUR][1000 genomes]
rs7927402	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7927514	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7940328	0.83[AMR][1000 genomes]
rs7942563	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs988513	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988514	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988515	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs988516	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26079600-26091600	Weak transcription	Fetal Kidney	kidney
2	chr11:26082400-26094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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