Variant report
| Variant | rs1387506 |
|---|---|
| Chromosome Location | chr11:26066624-26066625 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | PBX3 | chr11:26066535-26067000 | SK-N-SH | brain: | n/a | n/a |
| 2 | POLR2A | chr11:26066598-26066988 | H1-neurons | neurons: | n/a | n/a |
| 3 | REST | chr11:26066312-26067249 | H1-neurons | neurons: | n/a | n/a |
| 4 | POLR2A | chr11:26066544-26067043 | H1-neurons | neurons: | n/a | n/a |
| 5 | REST | chr11:26066585-26067205 | H1-neurons | neurons: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255086 | TF binding region |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10732479 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10734366 | 1.00[JPT][hapmap] |
| rs10742127 | 1.00[JPT][hapmap] |
| rs10742128 | 1.00[JPT][hapmap] |
| rs10767499 | 0.89[ASN][1000 genomes] |
| rs10767500 | 1.00[ASN][1000 genomes] |
| rs10834896 | 0.90[ASN][1000 genomes] |
| rs10834897 | 1.00[JPT][hapmap] |
| rs10834898 | 1.00[JPT][hapmap] |
| rs11029100 | 0.89[ASN][1000 genomes] |
| rs1387503 | 1.00[JPT][hapmap] |
| rs1387507 | 1.00[JPT][hapmap] |
| rs1906837 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1948211 | 1.00[ASN][1000 genomes] |
| rs2035732 | 1.00[ASN][1000 genomes] |
| rs2035733 | 1.00[ASN][1000 genomes] |
| rs4104018 | 1.00[ASN][1000 genomes] |
| rs4363548 | 1.00[ASN][1000 genomes] |
| rs4469842 | 1.00[ASN][1000 genomes] |
| rs4575221 | 1.00[ASN][1000 genomes] |
| rs6484193 | 1.00[JPT][hapmap] |
| rs7101817 | 1.00[JPT][hapmap] |
| rs7105188 | 1.00[JPT][hapmap] |
| rs7105339 | 1.00[JPT][hapmap] |
| rs7115939 | 1.00[JPT][hapmap] |
| rs7116083 | 1.00[JPT][hapmap] |
| rs7119696 | 1.00[JPT][hapmap] |
| rs7120325 | 1.00[ASN][1000 genomes] |
| rs7123678 | 1.00[JPT][hapmap] |
| rs7924859 | 1.00[ASN][1000 genomes] |
| rs7929415 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7938835 | 1.00[ASN][1000 genomes] |
| rs988513 | 1.00[JPT][hapmap] |
| rs988514 | 1.00[JPT][hapmap] |
| rs988515 | 1.00[JPT][hapmap] |
| rs988516 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046507 | chr11:25469712-26111707 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041778 | chr11:25898574-26098141 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26066400-26067200 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
