Variant report

Variant	rs12803860
Chromosome Location	chr11:26070031-26070032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501034	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10501035	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10732479	1.00[JPT][hapmap]
rs10734366	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10734367	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10734371	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10742127	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10742128	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10742131	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10742133	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10767501	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10767502	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10767505	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10767506	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10767508	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10767512	0.80[AMR][1000 genomes]
rs10834897	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10834904	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs12225865	1.00[CHB][hapmap]
rs12785755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387503	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1387505	0.85[EUR][1000 genomes]
rs1387506	1.00[JPT][hapmap]
rs1387507	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472014	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1489501	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1489502	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1586607	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1906841	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1906842	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1906843	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1979623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994547	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1994548	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1994549	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2130232	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2130234	0.85[EUR][1000 genomes]
rs2171733	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2171734	0.85[EUR][1000 genomes]
rs2349794	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2349795	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2349796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075765	0.83[CEU][hapmap]
rs4328171	0.85[EUR][1000 genomes]
rs4335493	0.83[EUR][1000 genomes]
rs4336988	0.85[EUR][1000 genomes]
rs4353231	0.85[EUR][1000 genomes]
rs4359162	0.85[EUR][1000 genomes]
rs4515923	0.85[EUR][1000 genomes]
rs4536165	0.85[EUR][1000 genomes]
rs4536166	0.85[EUR][1000 genomes]
rs4587687	0.85[EUR][1000 genomes]
rs6484193	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7101817	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7105188	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7105339	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7114213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115939	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7116083	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7119696	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7123678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs72882161	0.82[EUR][1000 genomes]
rs7924859	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7926366	0.85[EUR][1000 genomes]
rs7927402	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7927514	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7929362	0.85[EUR][1000 genomes]
rs7929524	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7940010	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940328	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7942563	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7949618	0.85[EUR][1000 genomes]
rs7950045	0.85[EUR][1000 genomes]
rs9299995	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs983509	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs988513	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs988514	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs988515	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs988516	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26069600-26070400	Enhancers	Ovary	ovary
2	chr11:26069800-26070200	Enhancers	Psoas Muscle	Psoas
3	chr11:26069800-26070400	Enhancers	Fetal Muscle Leg	muscle
4	chr11:26069800-26070400	Enhancers	Right Atrium	heart

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