Variant report

Variant	rs1472014
Chromosome Location	chr11:26077383-26077384
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501034	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10501035	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10732480	0.83[AFR][1000 genomes]
rs10734366	0.87[EUR][1000 genomes]
rs10734367	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734369	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10734371	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10742127	0.88[EUR][1000 genomes]
rs10742128	0.88[EUR][1000 genomes]
rs10742131	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742133	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10767500	0.82[AMR][1000 genomes]
rs10767501	0.87[EUR][1000 genomes]
rs10767502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10767505	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10767506	0.85[AFR][1000 genomes]
rs10767508	0.85[AFR][1000 genomes]
rs10767512	0.81[AFR][1000 genomes]
rs10834898	0.88[EUR][1000 genomes]
rs10834904	0.84[AFR][1000 genomes]
rs12785755	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12803371	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12803860	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1387503	0.88[EUR][1000 genomes]
rs1387505	0.88[EUR][1000 genomes]
rs1489501	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1489502	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1552582	0.85[AMR][1000 genomes]
rs1586607	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1826052	0.82[AMR][1000 genomes]
rs1906841	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1906842	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1906843	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1979623	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1979624	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1994547	0.85[AFR][1000 genomes]
rs1994548	0.85[AFR][1000 genomes]
rs1994549	0.85[AFR][1000 genomes]
rs2130232	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2130234	0.88[EUR][1000 genomes]
rs2171733	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2171734	0.88[EUR][1000 genomes]
rs2349794	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2349795	0.95[AFR][1000 genomes]
rs2349796	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4328171	0.88[EUR][1000 genomes]
rs4335493	0.86[EUR][1000 genomes]
rs4336988	0.88[EUR][1000 genomes]
rs4353231	0.88[EUR][1000 genomes]
rs4359162	0.88[EUR][1000 genomes]
rs4515923	0.88[EUR][1000 genomes]
rs4536165	0.88[EUR][1000 genomes]
rs4536166	0.88[EUR][1000 genomes]
rs4587687	0.88[EUR][1000 genomes]
rs4923339	0.83[AMR][1000 genomes]
rs6484193	0.88[EUR][1000 genomes]
rs7101817	0.88[EUR][1000 genomes]
rs7105188	0.88[EUR][1000 genomes]
rs7105339	0.88[EUR][1000 genomes]
rs7114213	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7114574	0.80[AFR][1000 genomes]
rs7115939	0.88[EUR][1000 genomes]
rs7116083	0.88[EUR][1000 genomes]
rs7119696	0.88[EUR][1000 genomes]
rs7123678	0.88[EUR][1000 genomes]
rs7131491	0.87[AMR][1000 genomes]
rs7924859	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7926366	0.88[EUR][1000 genomes]
rs7927402	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7927514	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7929362	0.88[EUR][1000 genomes]
rs7929524	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7940010	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7940328	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7942563	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7949618	0.88[EUR][1000 genomes]
rs7950045	0.88[EUR][1000 genomes]
rs9299995	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs983509	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs988513	0.88[EUR][1000 genomes]
rs988514	0.88[EUR][1000 genomes]
rs988515	0.88[EUR][1000 genomes]
rs988516	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327301	chr11:26077276-26080074	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26077000-26077400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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