Variant report

Variant	rs7131491
Chromosome Location	chr11:26100938-26100939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10501037	0.95[EUR][1000 genomes]
rs10732479	1.00[JPT][hapmap]
rs10732480	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10734366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10734369	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10734371	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10742127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10742128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs10742133	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10742134	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10767505	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10767506	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10767508	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10767511	0.86[EUR][1000 genomes]
rs10767512	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10767515	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10834897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834898	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834904	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10834912	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11029114	1.00[CHB][hapmap]
rs11029121	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11029127	0.81[EUR][1000 genomes]
rs11029128	0.81[EUR][1000 genomes]
rs11029130	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11029133	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11029137	0.86[EUR][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1387506	1.00[JPT][hapmap]
rs1387507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472014	0.87[AMR][1000 genomes]
rs1489501	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1489502	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1489506	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1552582	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1586607	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1826052	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1906841	0.80[AMR][1000 genomes]
rs1906842	0.80[AMR][1000 genomes]
rs1906843	0.81[AMR][1000 genomes]
rs1994547	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1994548	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1994549	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4923339	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55850236	0.84[EUR][1000 genomes]
rs59456245	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6484193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs66633054	0.81[EUR][1000 genomes]
rs66648383	0.81[EUR][1000 genomes]
rs7101817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7102366	1.00[ASN][1000 genomes]
rs7105188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs7105339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7115939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7116083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7119696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7123678	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72885762	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7927402	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7927514	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7940010	0.85[AMR][1000 genomes]
rs7942563	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs988513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988515	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs988516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7131491	SIKE1	trans	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26096000-26101600	Weak transcription	Fetal Kidney	kidney
2	chr11:26096600-26102000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:26100000-26101200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26100200-26101400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:26100200-26101800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:26100400-26101000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26100400-26101400	Weak transcription	GM12878-XiMat	blood
8	chr11:26100400-26102200	Enhancers	NHEK	skin
9	chr11:26100400-26102400	Enhancers	Hela-S3	cervix
10	chr11:26100800-26101200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:26100800-26101400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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